Dr Peter Visscher
Telephone: +61 7 3362 0166
Facsimile: +61 7 3362 0101
Email: Peter.Visscher@qimr.edu.au

Peter Visscher is a Senior Principal Research Fellow (SPRF) at QIMR, and holds an honorary professorship with the Institute for Molecular Bioscience at UQ. He was born in Holland from Dutch and English parents. His children are first backcrosses. After obtaining a BSc in Animal Science he worked for a couple of years in the Department of Agriculture in Holland before moving to Edinburgh for a Masters and PhD in animal breeding and genetics (supervised by Bill Hill FRS and Robin Thompson FRSE), working on the estimation of genetic parameters in large dairy cattle pedigrees. A productive postdoc with Mike Goddard (Melbourne) was followed by a return to Edinburgh, where he worked with Chris Haley (Roslin Institute) on marker-assisted-selection and QTL mapping methodology. In 1995 he moved to a faculty position at the University of Edinburgh, working on QTL mapping methods, software tools and practical applications. Since ~1998 his main interest and research focus has been in genetic epidemiology, statistical genetics and human quantitative & population genetics. He joined the Queensland Institute of Medical Research in January 2005.


Publications
2010
 Yang J, Wray NR, Visscher PM: Comparing apples and oranges: equating the power of case-control and quantitative trait association studies. Genetic Epidemiology 34(3):254-257, 2010 [PDF] [PubMed]
 Macgregor S, Bellis C, Lea RA, Cox H, Dyer T, Blangero J, Visscher PM, Griffiths LR: Legacy of mutiny on the Bounty: founder effect and admixture on Norfolk Island. European Journal of Human Genetics 18:67-72, 2010 [PDF] [PubMed]
 Idaghdour Y, Czika W, Shianna KV, Lee SH, Visscher PM, Martin HC, Miclaus K, Jadallah SJ, Goldstein DB, Wolfinger RD, Gibson G: Geographical genomics of human leukocyte gene expression variation in southern Morocco. Nature Genetics 42(1):62-67, 2010 [PDF unavailable] [PubMed]
 Wray NR, Visscher PM: Narrowing the boundaries of the genetic architecture of schizophrenia. Schizophrenia bulletin 36(1):14-23, 2010 [PDF] [PubMed]
 McEvoy BP, Zhao ZZ, Macgregor S, Bellis C, Lea RA, Cox H, Montgomery GW, Griffiths LR, Visscher PM: European and Polynesian admixture in the Norfolk Island population. Heredity 105:229-234, 2010 [PDF unavailable] [PubMed]
 Webbink D, Martin NG, Visscher PM: Does education reduce the probability of being overweight? Journal of Health Economics 29:29-38, 2010 [PDF] [PubMed]
 Wray NR, Yang J, Goddard ME, Visscher PM: The genetic interpretation of area under the ROC curve in genomic profiling. PLoS Genetics 6(2):e1000864, 2010 [PDF] [PubMed]
 Houlihan LM, Davies G, Tenesa A, Harris SE, Luciano M, Gow AJ, McGhee KA, Liewald DC, Porteous DJ, Starr JM, Lowe GD, Visscher PM, Deary IJ: Common Variants of Large Effect in F12, KNG1, and HRG Are Associated with Activated Partial Thromboplastin Time. American Journal of Human Genetics 86:626-631, 2010 [PDF] [PubMed]
 Visscher PM, Posthuma D: Statistical Power to Detect Genetic Loci Affecting Environmental Sensitivity. Behavior Genetics 40:728-733, 2010 [PDF unavailable] [PubMed]
 Gratten J, Wilson AJ, McRae AF, Beraldi D, Visscher PM, Pemberton JM, Slate J: No evidence for warming climate theory of coat colour change in Soay sheep: a comment on Maloney et al. Biology Letters 2010 [PDF unavailable] [PubMed]
 Yang J, Benyamin B, McEvoy BP, Gordon S, Henders AK, Nyholt DR, Madden PA, Heath AC, Martin NG, Montgomery GW, Goddard ME, Visscher PM: Common SNPs explain a large proportion of the heritability for human height. Nature Genetics 42(7):565-569, 2010 [PDF] [PubMed]
 Lee SH, Goddard ME, Visscher PM, van der Werf JH: Using the realized relationship matrix to disentangle confounding factors for the estimation of genetic variance components of complex traits. Genetics, selection, evolution 42(1):22, 2010 [PDF unavailable] [PubMed]
 Liu JZ, McRae AF, Nyholt DR, Medland SE, Wray NR, Brown KM, AMFS Investigators, Hayward NK, Montgomery GW, Visscher PM, Martin NG, Macgregor S: A versatile gene-based test for genome-wide association studies. American Journal of Human Genetics 87(1):139-145, 2010 [PDF] [PubMed]
 McEvoy BP, Lind JM, Wang ET, Moyzis RK, Visscher PM, van Holst Pellekaan SM, Wilton AN: Whole-Genome Genetic Diversity in a Sample of Australians with Deep Aboriginal Ancestry. American Journal of Human Genetics 87(2):297-305, 2010 [PDF unavailable] [PubMed]
2009
 Chenoweth SF, Visscher PM: Association Mapping in Outbred Populations: Power and Efficiency When Genotyping Parents and Phenotyping Progeny. Genetics 181:755-765, 2009 [PDF] [PubMed]
 Byrne EM, McRae AF, Duffy DL, Zhao ZZ, Martin NG, Wright MJ, Montgomery GW, Visscher PM: Association Study of Common Mitochondrial Variants and Cognitive Ability. Behavior Genetics 39:504-512, 2009 [PDF] [PubMed]
 Posthuma D, de Koning, Dolan C, Goddard ME, Visscher PM: A note on permutation tests for genetic association analysis of quantitative traits when variances are heterogeneous. Genetic Epidemiology 33:710-716, 2009 [PDF] [PubMed]
 Benyamin B, McRae AF, Zhu G, Gordon S, Henders AK, Palotie A, Peltonen L, Martin NG, Montgomery GW, Whitfield JB, Visscher PM: Variants in TF and HFE Explain approximately 40% of Genetic Variation in Serum-Transferrin Levels. American Journal of Human Genetics 84:60-65, 2009 [PDF] [PubMed]
 Luciano M, Miyajima F, Lind PA, Bates TC, Horan M, Harris SE, Wright MJ, Ollier WE, Hayward C, Pendleton N, Gow AJ, Visscher PM, Starr JM, Deary IJ, Martin NG, Payton A: Variation in the Dysbindin gene and normal cognitive function in three independent population samples. Genes, brain, and behavior 8:218-227, 2009 [PDF] [PubMed]
 Houlihan LM, Harris SE, Luciano M, Gow AJ, Starr JM, Visscher PM, Deary IJ: Replication study of candidate genes for cognitive abilities: the Lothian Birth Cohort 1936. Genes, brain, and behavior 8:238-247, 2009 [PDF unavailable] [PubMed]
 Kaminsky ZA, Tang T, Wang SC, Ptak C, Oh GH, Wong AH, Feldcamp LA, Virtanen C, Halfvarson J, Tysk C, McRae AF, Visscher PM, Montgomery GW, Gottesman II, Martin NG, Petronis A: DNA methylation profiles in monozygotic and dizygotic twins. Nature Genetics 41(2):240-245, 2009 [PDF] [PubMed]
 Visscher PM, Montgomery GW: Genome-wide association studies and human disease: from trickle to flood. JAMA 302(18):2028-2029, 2009 [PDF] [PubMed]
 Visscher PM: Whole genome approaches to quantitative genetics. Genetica 136:351-358, 2009 [PDF] [PubMed]
 Luciano M, Gow AJ, Taylor MD, Hayward C, Harris SE, Campbell H, Porteous DJ, Starr JM, Visscher PM, Deary IJ: Apolipoprotein E is not Related to Memory Abilities at 70 Years of Age. Behavior Genetics 39:6-14, 2009 [PDF unavailable] [PubMed]
 Nyholt DR, Yu CE, Visscher PM: On Jim Watson's APOE status: genetic information is hard to hide. European Journal of Human Genetics 17:147-149, 2009 [PDF] [PubMed]
 Evans DM, Visscher PM, Wray NR: Harnessing the Information Contained Within Genome-wide Association Studies to Improve Individual Prediction of Complex Disease Risk. Human Molecular Genetics 18:3525-3531, 2009 [PDF unavailable] [PubMed]
 International Schizophrenia Consortium, Purcell SM, Wray NR, Stone JL, Visscher PM, O'Donovan MC, Sullivan PF, Sklar P: Common polygenic variation contributes to risk of schizophrenia and bipolar disorder. Nature 2009 [PDF] [PubMed]
 Benyamin B, Visscher PM, McRae AF: Family-based genome-wide association studies. Pharmacogenomics 10(2):181-190, 2009 [PDF] [PubMed]
 Hayes BJ, Visscher PM, Goddard ME: Increased accuracy of artificial selection by using the realized relationship matrix. Genetical Research 91(1):47-60, 2009 [PDF] [PubMed]
 McEvoy BP, Montgomery GW, McRae AF, Ripatti S, Perola M, Spector TD, Cherkas L, Ahmadi KR, Boomsma D, Willemsen G, Hottenga JJ, Pedersen NL, Magnusson PKE, Kyvik KO, Christensen K, Kaprio J, Heikkila K, Palotie A, Widen E, Muilu J, Syvanen A-C, Liljedahl U, Hardiman O, Cronin S, Peltonen L, Martin NG, Visscher PM: Geographical structure and differential natural selection among North European populations. Genome Research 19:804-814, 2009 [PDF] [PubMed]
 Luciano M, Gow AJ, Harris SE, Hayward C, Allerhand M, Starr JM, Visscher PM, Deary IJ: Cognitive ability at age 11 and 70 years, information processing speed, and APOE variation: The Lothian Birth Cohort 1936 study. Psychology and Aging 24(1):129-138, 2009 [PDF] [PubMed]
 Nagamine Y, Pong-Wong R, Visscher PM, Haley CS: Detection of multiple quantitative trait loci and their pleiotropic effects in outbred pig populations. Genetics, selection, evolution 41:44, 2009 [PDF unavailable] [PubMed]
 McEvoy BP, Visscher PM: Genetics of human height. Economics and human biology 7(3):294-306, 2009 [PDF unavailable] [PubMed]
 Manolio TA, Collins FS, Cox NJ, Goldstein DB, Hindorff LA, Hunter DJ, McCarthy MI, Ramos EM, Cardon LR, Chakravarti A, Cho JH, Guttmacher AE, Kong A, Kruglyak L, Mardis E, Rotimi CN, Slatkin M, Valle D, Whittemore AS, Boehnke M, Clark AG, Eichler EE, Gibson G, Haines JL, Mackay TF, McCarroll SA, Visscher PM: Finding the missing heritability of complex diseases. Nature 461(7265):747-753, 2009 [PDF] [PubMed]
 Yang J, Visscher PM, Wray NR: Sporadic cases are the norm for complex disease. European Journal of Human Genetics e-pub 14 Oct: 2009 [PDF] [PubMed]
 Craig JE, Hewitt AW, McMellon AE, Henders AK, Ma L, Wallace L, Sharma S, Burdon KP, Visscher PM, Montgomery GW, Macgregor S: Rapid inexpensive genome-wide association using pooled whole blood. Genome Research 19:2075-2080, 2009 [PDF] [PubMed]
 Keller MC, McRae AF, McGaughran JM, Visscher PM, Martin NG, Montgomery GW: Non-pathological paternal isodisomy of chromosome 2 detected from a genome-wide SNP scan. American journal of medical genetics. Part A 149A(8):1823-1826, 2009 [PDF] [PubMed]
 Visscher PM, Hill WG: The limits of individual identification from sample allele frequencies: theory and statistical analysis. PLoS Genetics 5(10):e1000628, 2009 [PDF] [PubMed]
 Byrne EM, McRae AF, Duffy DL, Zhao ZZ, Martin NG, Whitfield JB, Visscher PM, Montgomery GW: Family-based mitochondrial association study of traits related to type 2 diabetes and the metabolic syndrome in adolescents. Diabetologia 52(11):2359-2368, 2009 [PDF] [PubMed]
 Webbink D, Martin NG, Visscher PM: Does teenage childbearing reduce investment in human capital? Journal of Population Economics e-pub 4 Sept: 2009 [PDF]
 Benyamin B, Ferreira MA, Willemsen G, Gordon SD, Middelberg RPS, McEvoy BP, Hottenga JJ, Henders AK, Campbell MJ, Wallace L, Frazer IH, Heath AC, de Geus EJC, Nyholt DR, Visscher PM, Penninx BW, Boomsma DI, Martin NG, Montgomery GW, Whitfield JB: Common variants in TMPRSS6 are associated with iron status and erythrocyte volume. Nature Genetics 41:1173-1175, 2009 [PDF] [PubMed]
 Knight HM, Pickard BS, Maclean A, Malloy MP, Soares DC, McRae AF, Condie A, White A, Hawkins W, McGhee K, van Beck M, Macintyre DJ, Starr JM, Deary IJ, Visscher PM, Porteous DJ, Cannon RE, St Clair D, Muir WJ, Blackwood DH: A Cytogenetic Abnormality and Rare Coding Variants Identify ABCA13 as a Candidate Gene in Schizophrenia, Bipolar Disorder, and Depression. American Journal of Human Genetics 85:833-846, 2009 [PDF] [PubMed]
2008
 Nagamine Y, Nirasawa K, Takahashi H, Sasaki O, Ishii K, Minezawa M, Oda S, Visscher PM, Furukawa T: Estimation of the time of divergence between Japanese Mishima island cattle and other cattle populations using microsatellite DNA markers. Journal of Heredity 99(2):202-207, 2008 [PDF] [PubMed]
 Anderson CA, Zhu G, Falchi M, van den Berg M, Treloar SA, Spector TD, Martin NG, Boomsma DI, Visscher PM, Montgomery GW: A genome-wide linkage scan for age at menarche in three populations of European descent. Journal of Clinical Endocrinology and Metabolism 93(10):3965-3970, 2008 [PDF] [PubMed]
 Stone JL, O'Donovan MC, Gurling H, Kirov GK, Blackwood DHR, Corvin A, Craddock NJ, Gill M, Hultman CM, Lichtenstein P, McQuillin A, Pato CN, Ruderfer DM, Owen MJ, St Clair D, Sullivan PF, Scolnick EM, Korn J, Macgregor S, Morris DW, O'Dushlaine CT, Daly MJ, Visscher PM, Holmans PA, Sklar P, Purcell SM: Rare chromosomal deletions and duplications increase risk of schizophrenia. Nature Epub 2008 Jul 30:237-241, 2008 [PDF] [PubMed]
 Visscher PM: Sizing up human height variation. Nature Genetics 40(5):489-490, 2008 [PDF] [PubMed]
 Macgregor S, Zhao ZZ, Henders A, Martin NG, Montgomery GW, Visscher PM: Highly cost-efficient genome-wide association studies using DNA pools and dense SNP arrays. Nucleic Acids Research 36(6):e35, 2008 [PDF] [PubMed]
 Lee SH, van der Werf JH, Hayes BJ, Goddard ME, Visscher PM: Predicting unobserved phenotypes for complex traits from whole-genome SNP data. PLoS Genetics 4(10):e1000231, 2008 [PDF unavailable] [PubMed]
 Hill WG, Goddard ME, Visscher PM: Data and theory point to mainly additive genetic variance for complex traits. PLoS Genetics 4(2): e1000008, 2008 [PDF] [PubMed]
 McRae AF, Byrne EM, Zhao ZZ, Montgomery GW, Visscher PM: Power and SNP Tagging in Whole Mitochondrial Genome Association Studies. Genome Research 18:911-917, 2008 [PDF] [PubMed]
 Ayub M, Irfan M, Maclean A, Naeem F, Macgregor S, Visscher PM, Muir W, Blackwood D: Linkage analysis in a large family from Pakistan with depression and a high incidence of consanguineous marriages. Human Heredity 66(3):190-198, 2008 [PDF unavailable] [PubMed]
 Hur YM, Kaprio J, Iacono WG, Boomsma DI, McGue M, Silventoinen K, Martin NG, Luciano M, Visscher PM, Rose RJ, He M, Ando J, Ooki S, Nonaka K, Lin CC, Lajunen HR, Cornes BK, Bartels M, van Beijsterveldt CE, Cherny SS, Mitchell K: Genetic influences on the difference in variability of height, weight and body mass index between Caucasian and East Asian adolescent twins. International Journal of Obesity 32:1455-1467, 2008 [PDF] [PubMed]
 Dolezal M, Schwarzenbacher H, Soller M, Solkner J, Visscher PM: Multiple-marker mapping for selective DNA pooling within large families. Journal of Dairy Science 91(7):2864-2873, 2008 [PDF unavailable] [PubMed]
 Benyamin B, Perola M, Cornes BK, Madden PAF, Palotie A, Nyholt DR, Montgomery GW, Peltonen L, Martin NG, Visscher PM: Within-family outliers: segregating alleles or environmental effects? A linkage analysis of height from 5815 sibling pairs. European Journal of Human Genetics 16(4):516-524, 2008 [PDF] [PubMed]
 Visscher PM, Andrew T, Nyholt DR: Genome-wide association studies of quantitative traits with related individuals: little (power) lost but much to be gained. European Journal of Human Genetics 16(3):387-390, 2008 [PDF] [PubMed]
 Luciano M, Lind PA, Deary IJ, Payton A, Posthuma D, Butcher LM, Bochdanovits Z, Whalley LJ, Visscher PM, Harris SE, Polderman TJ, Davis OS, Wright MJ, Starr JM, de Geus EJC, Bates TC, Montgomery GW, Boomsma DI, Martin NG, Plomin R: Testing replication of a 5-SNP set for general cognitive ability in six population samples. European Journal of Human Genetics 16:1388-1395, 2008 [PDF] [PubMed]
 Byrne EM, McRae AF, Zhao ZZ, Martin NG, Montgomery GW, Visscher PM: The use of common mitochondrial variants to detect and characterise population structure in the Australian population: implications for genome-wide association studies. European Journal of Human Genetics 16(11):1396-1403, 2008 [PDF] [PubMed]
 Keith JM, McRae AF, Duffy DL, Mengersen K, Visscher PM: Calculation of IBD probabilities with dense SNP or sequence data. Genetic Epidemiology (epub 20/03/2008) 2008 [PDF unavailable] [PubMed]
 Sved JA, McRae AF, Visscher PM: Divergence between human populations estimated from linkage disequilibrium. American Journal of Human Genetics 83(6):737-743, 2008 [PDF unavailable] [PubMed]
 Wray NR, Middeldorp CM, Birley AJ, Gordon SD, Sullivan PF, Visscher PM, Nyholt DR, Willemsen G, de Geus EJC, Slagboom PE, Montgomery GW, Martin NG, Boomsma DI: Genome-wide linkage analysis of multiple measures of neuroticism of 2 large cohorts from Australia and the Netherlands. Archives of General Psychiatry 65(6):649-658, 2008 [PDF] [PubMed]
 Gratten J, Wilson AJ, McRae AF, Beraldi D, Visscher PM, Pemberton JM, Slate J: A localized negative genetic correlation constrains microevolution of coat color in wild sheep. Science 319(5861):318-320, 2008 [PDF] [PubMed]
 Macgregor S, Hottenga JJ, Lind PA, Suchiman HE, Willemsen G, Slagboom PE, Montgomery GW, Martin NG, Visscher PM, Boomsma DI: Vitamin d receptor gene polymorphisms have negligible effect on human height. Twin Research and Human Genetics 11(5):488-494, 2008 [PDF] [PubMed]
 Visscher PM, Gordon S, Neale MC: Power of the classical twin design revisited: II detection of common environmental variance. Twin Research and Human Genetics 11(1):48-54, 2008 [PDF] [PubMed]
 Webbink D, Posthuma D, Boomsma DI, de Geus EJC, Visscher PM: Do twins have lower cognitive ability than singletons? Intelligence 36:539-547, 2008 [PDF]
 Edmonds CJ, Isaacs EB, Rogers M, Lanigan J, Singhal A, Lucas A, Gringras P, Denton J, Visscher PM, Deary IJ: Inspection Time and cognitive abilities in twins aged 7 to 17 years: age-related changes, heritability and genetic covariance. Intelligence 36:210-225, 2008 [PDF]
 Oldmeadow C, Wood I, Mengersen K, Visscher PM, Martin NG, Duffy DL: Investigation of the relationship between smoking and appendicitis in Australian twins. Annals of Epidemiology 18(8):631-636, 2008 [PDF] [PubMed]
 Anderson CA, Maclean A, Dunnigan MG, Pelosi AJ, Murray V, McKee I, McDonald G, Burt DW, Morrice DR, Muir WJ, Visscher PM, Blackwood DHR: A genome-wide linkage study in families with major depression and co-morbid unexplained swelling. American journal of medical genetics. Part B, Neuropsychiatric genetics 147B(3):356-362, 2008 [PDF unavailable] [PubMed]
 Visscher PM, Hill WG, Wray NR: Heritability in the genomics era--concepts and misconceptions. Nature Reviews Genetics 9(4):255-266, 2008 [PDF] [PubMed]
 Avendano S, Visscher PM, Villanueva B: Response to selection from using identified genes and quadratic indices in two-traits breeding goals. Spanish Journal Of Agricultural Research 6:88-97, 2008 [PDF]
 Hasselbalch AL, Benyamin B, Visscher PM, Heitmann BL, Kyvik KO, Sorensen TI: Common Genetic Components of Obesity Traits and Serum Leptin. Obesity (Silver Spring, Md.) 16:2723-2729, 2008 [PDF unavailable] [PubMed]
 Wray NR, Goddard ME, Visscher PM: Prediction of individual genetic risk of complex disease. Current opinion in genetics & development 18:257-263, 2008 [PDF] [PubMed]
 Webbink D, Martin NG, Visscher PM: Does teenage childbearing increase smoking, drinking and body size? Journal of Health Economics 27:888-903, 2008 [PDF] [PubMed]
2007
 Beraldi D, McRae AF, Gratten J, Pilkington JG, Slate J, Visscher PM, Pemberton JM: Quantitative trait loci (QTL) mapping of resistance to strongyles and coccidia in the free-living Soay sheep (Ovis aries). International Journal for Parasitology 37(1):121-129, 2007 [PDF] [PubMed]
 Gratten J, Beraldi D, Lowder BV, McRae AF, Visscher PM, Pemberton JM, Slate J: Compelling evidence that a single nucleotide substitution in TYRP1 is responsible for coat-colour polymorphism in a free-living population of Soay sheep. Proceedings of the Royal Society B: Biological Sciences 274(1610):619-626, 2007 [PDF] [PubMed]
 Tenesa A, Navarro P, Hayes BJ, Duffy DL, Clarke GM, Goddard ME, Visscher PM: Recent human effective population size estimated from linkage disequilibrium. Genome Research 17(4):520-526, 2007 [PDF] [PubMed]
 Deary IJ, Gow AJ, Taylor MD, Corley J, Brett C, Wilson V, Campbell H, Whalley LJ, Visscher PM, Porteous DJ, Starr JM: The Lothian Birth Cohort 1936: a study to examine influences on cognitive ageing from age 11 to age 70 and beyond. BMC Geriatrics 7:1-12, 2007 [PDF] [PubMed]
 Beraldi D, McRae AF, Gratten J, Slate J, Visscher PM, Pemberton J: Mapping quantitative trait Loci underlying fitness-related traits in a free-living sheep population. Evolution 61(6):1403-1416, 2007 [PDF] [PubMed]
 Wood IA, Visscher PM, Mengersen K: Classification based upon gene expression data: bias and precision of error rates. Bioinformatics 23(11):1363-1370, 2007 [PDF] [PubMed]
 Webbink D, Hay D, Visscher PM: Does sharing the same class in school improve cognitive abilities of twins? Twin Research and Human Genetics 10(4):573-580, 2007 [PDF] [PubMed]
 Benyamin B, Sorensen TIA, Schousboe K, Fenger M, Visscher PM, Kyvik KO: Are there common genetic and environmental factors behind the endophenotypes associated with the metabolic syndrome? Diabetologia 50(9):1880-1888, 2007 [PDF] [PubMed]
 Perola M, Sammalisto S, Hiekkalinna T, Martin NG, Visscher PM, Montgomery GW, Benyamin B, Harris JR, Boomsma D, Willemsen G, Hottenga JJ, Christensen K, Kyvik KO, Sorensen TI, Pedersen NL, Magnusson PK, Spector TD, Widen E, Silventoinen K, Kaprio J, Palotie A, Peltonen L, GenomEUtwin Project: Combined Genome Scans for Body Stature in 6,602 European Twins: Evidence for Common Caucasian Loci. PLoS Genetics 3(6):1019-1028, 2007 [PDF] [PubMed]
 Benyamin B, Martin ICA, Cheung CC, Buckley MF, Thomson PC, Visscher PM, Moran C: Bodyweight QTL on mouse chromosomes 4 and 11 by selective genotyping: regression v. maximum likelihood. Australian Journal of Experimental Agriculture 47(6):677-682, 2007 [PDF]
 Ivkovic V, Vitart V, Rudan I, Janicijevic B, Smolej-Narancic N, Skaric-Juric T, Barbalic M, Polasek O, Kolcic I, Biloglav Z, Visscher PM, Hayward C, Hastie ND, Anderson N, Campbell H, Wright AF, Rudan P, Deary IJ: The Eysenck personality factors: psychometric structure, reliability, heritability and phenotypic and genetic correlations with psychological distress in an isolated Croatian population. Personality and Individual Differences 42(1):123-133, 2007 [PDF]
 Anderson CA, Duffy DL, Martin NG, Visscher PM: Estimation of variance components for age at menarche in twin families. Behavior Genetics 37(5):668-677, 2007 [PDF] [PubMed]
 Wray NR, Goddard ME, Visscher PM: Prediction of individual genetic risk to disease from genome-wide association studies. Genome Research 17(10):1520-1528, 2007 [PDF] [PubMed]
 Thornblad TA, Elliott KS, Jowett J, Visscher PM: Prioritization of positional candidate genes using multiple web-based software tools. Twin Research and Human Genetics 10(6):861-870, 2007 [PDF unavailable] [PubMed]
 Wray NR, Birley AJ, Sullivan PK, Visscher PM, Martin NG: Genetic and phenotypic stability of measures of neuroticism over 22 years. Twin Research and Human Genetics 10(5):695-702, 2007 [PDF] [PubMed]
 Visscher PM, Macgregor S, Benyamin B, Zhu G, Gordon S, Medland SE, Hill WG, Hottenga JJ, Willemsen G, Boomsma DI, Liu YZ, Deng HW, Montgomery GW, Martin NG: Genome Partitioning of Genetic Variation for Height from 11,214 Sibling Pairs. American Journal of Human Genetics 81(5):1104-1110, 2007 [PDF] [PubMed]
 McRae AF, Matigian NA, Vadlamudi L, Mulley JC, Mowry B, Martin NG, Berkovic SF, Hayward NK, Visscher PM: Replicated effects of sex and genotype on gene expression in human lymphoblastoid cell lines. Human Molecular Genetics 16(4):364-373, 2007 [PDF] [PubMed]
2006
 Visscher PM, Duffy DL: The value of relatives with phenotypes but missing genotypes in association studies for quantitative traits. Genetic Epidemiology 30(1):30-36, 2006 [PDF]
 Macgregor S, Knott SA, Visscher PM: False disease region identification from identity-by-descent haplotype sharing in the presence of phenocopies. Twin Research and Human Genetics 9(1):9-16, 2006 [PDF] [PubMed]
 Macgregor S, Visscher PM, Montgomery GW: Analysis of pooled DNA samples on high density arrays without prior knowledge of differential hybridization rates. Nucleic Acids Research 34(7): 2006 [PDF] [PubMed]
 Beraldi D, McRae AF, Gratten J, Slate J, Visscher PM, Pemberton JM: Development of a Linkage Map and Mapping of Phenotypic Polymorphisms in a Free-living Population of Soay Sheep (Ovis aries). Genetics 173(3):1521-1537, 2006 [PDF] [PubMed]
 Anderson CA, McRae AF, Visscher PM: A simple linear regression method for quantitative trait loci linkage analysis with censored observations. Genetics 173(3):1735-1745, 2006 [PDF] [PubMed]
 Benyamin B, Deary IJ, Visscher PM: Precision and bias of a normal finite mixture distribution model to analyze twin data when zygosity is unknown: simulations and application to IQ phenotypes on a large sample of twin pairs. Behavior Genetics 36(6):935-946, 2006 [PDF] [PubMed]
 Visscher PM: Variation of Estimates of SNP and Haplotype Diversity and Linkage Disequilibrium in samples from the same population due to Experimental and Evolutionary Sample Size. Annals of Human Genetics 70:1-8, 2006 [PDF]
 Visscher PM, Hill WG: Estimation of Recombination Rate and Detection of Recombination Hotspots from Dense SNP Trio Data. Genetics 173(4):2415-2417, 2006 [PDF]
 Macgregor S, Cornes BK, Martin NG, Visscher PM: Bias, precision and heritability of self-reported and clinically measured height in Australian twins. Human Genetics 120(4):571-580, 2006 [PDF] [PubMed]
 Navarro P, Visscher PM, Chatziplis D, Koerhuis ANM, Haley CS: Genetic parameters for blood oxygen saturation, body weight and breast conformation in 4 meat-type chicken lines. British Poultry Science 47(6):659-670, 2006 [PDF]
 Navarro P, Visscher PM, Chatziplis D, Koerhuis ANM, Haley CS: Segregation analysis of blood oxygen saturation in broilers suggests a major gene influence on ascites. British Poultry Science 47(6):671-684, 2006 [PDF]
 Ferreira MA, Visscher PM, Martin NG, Duffy DL: A simple method to localise pleiotropic susceptibility loci using univariate linkage analyses of correlated traits. European Journal of Human Genetics 14(8):953-962, 2006 [PDF] [PubMed]
 Visscher PM, Medland SE, Ferreira MA, Morley KI, Zhu G, Cornes BK, Montgomery GW, Martin NG: Assumption-Free Estimation of Heritability from Genome-Wide Identity-by-Descent Sharing between Full Siblings. PLoS Genetics 2(3):316-325, 2006 [PDF] [PubMed]
 Webbink D, Roeleveld J, Visscher PM: Identification of Twin Pairs from Large Population Based Samples. Twin Research and Human Genetics 9(4):496-500, 2006 [PDF]
 Visscher PM: A note on the asymptotic distribution of likelihood ratio tests to test variance components. Twin Research and Human Genetics 9(4):490-495, 2006 [PDF]
 Montgomery GW, Zhu G, Hottenga JJ, Duffy DL, Heath AC, Boomsma DI, Martin NG, Visscher PM: HLA and Genomewide Allele Sharing in Dizygotic Twins. American Journal of Human Genetics 79(6):1052-1058, 2006 [PDF] [PubMed]
 Gordon S, Visscher PM: Residual linkage: Why do linkage peaks not disappear after an association study? Human Genetics 121(1):77-82, 2006 [PDF]
 Posthuma D, Visscher PM, Willemsen G, Zhu G, Martin NG, Slagboom PE, de Geus EJC, Boomsma DI: Replicated linkage for eye color on 15q using comparative ratings of sibling pairs. Behavior Genetics 36(1):12-17, 2006 [PDF] [PubMed]
2005
 Tenesa A, Visscher PM, Carothers A, Knott SA: Marker and trait based analysis of QTL using selective genotyping. Behavior Genetics 35(2):219-228, 2005 [PDF]
 Visscher PM, Haley CS, Ewald H, Mors O, Egeland J, Thiel B, Ginns E, Muir W, Blackwood DHR: Joint multi-population analysis for genetic linkage of bipolar disorder or "wellness" to chromosome 4p. American Journal of Medical Genetics 133:18-24, 2005 [PDF]
 McRae AF, Bishop SC, Walling GA, Wilson AD, Visscher PM: Mapping of Multiple Quantitative Trait Loci for Growth and Carcass Traits in a Complex Commercial Sheep Pedigree. Animal Science 80:135-141, 2005 [PDF]
 Navarro P, Visscher PM, Knott SA, Burt DW, Hocking P, Haley CS: Mapping quantitative trait loci affecting organ weights and blood variables in a broiler-layer cross. British Poultry Science 46(4):430-442, 2005 [PDF]
 Benyamin B, Wilson V, Whalley LJ, Visscher PM, Deary IJ: Large consistent estimates of IQ heritability in two entire populations of 11-year-olds from 1932 and 1947. Behavior Genetics 35(5):525-534, 2005 [PDF]
 Wall E, Visscher PM, Hospital F, Woolliams JA: Genomic contributions in livestock gene introgression programmes. Genetics Selection Evolution 37(3):291-313, 2005 [PDF]
 McRae AF, Pemberton JM, Visscher PM: Modeling linkage disequilibrium in natural populations: the example of the Soay sheep population of St. Kilda, Scotland. Genetics 171(1):251-258, 2005 [PDF] [PubMed]
 Uimari P, Kontkanen O, Visscher PM, Pirskanen M, Fuentes R, Salonen JT: Genome-wide linkage disequilibrium from 100,000 SNPs in the East Finland founder population. Twin Research and Human Genetics 8(3):185-197, 2005 [PDF]
 Macgregor S, Knott SA, White I, Visscher PM: Quantitative trait locus analysis of longitudinal quantitative trait data in complex pedigrees. Genetics 171(3):1365-1376, 2005 [PDF] [PubMed]
 Charlesworth B, Keightley P, Visscher PM: Introduction: population genetics, quantitative genetics and animal improvement: papers in honour of William (Bill) Hill. Philosophical Transactions of the Royal Society B-Biological Sciences 360:1365-1366, 2005 [PDF]
 Montgomery GW, Campbell MJ, Dickson PA, Herbert S, Siemering K, Ewen-White KR, Visscher PM, Martin NG: Estimation of the rate of SNP genotyping errors from DNA extracted from different tissues. Twin Research and Human Genetics 8(4):346-352, 2005 [PDF] [PubMed]
 Ferreira MA, O'Gorman L, Le Souef P, Burton PR, Toelle BG, Robertson CF, Visscher PM, Martin NG, Duffy DL: Robust estimation of experimentwise p values applied to a genome scan of multiple asthma traits identifies a new region of significant linkage on chromosome 20q13. American Journal of Human Genetics 77(6):1075-1085, 2005 [PDF] [PubMed]
2004
 Nagamine Y, Visscher PM, Haley CS: QTL detection and allelic effects for growth and fat traits in outbred pig populations. Genetics Selection Evolution 36(1):83-96, 2004 [PDF]
 Tenesa A, Wright AF, Knott SA, Carothers AD, Hayward C, Angius A, Persico I, Maestrale G, Hastie ND, Pirastu M, Visscher PM: Extent of linkage disequilibrium in a Sardinian sub-isolate: sampling and methodological considerations. Human Molecular Genetics 13(1):25-33, 2004 [PDF]
 Visscher PM, Goddard ME: Prediction of the confidence interval of QTL location. Behavior Genetics 34(4):477-482, 2004 [PDF]
 Walling GA, Visscher PM, Wilson AD, McTeir BL, Simm G, Bishop SC: Mapping of quantitative trait loci for growth and carcass traits in commercial sheep populations. Journal of Animal Science 82(8):2234-2245, 2004 [PDF]
 Yu X, Knott SA, Visscher PM: Theoretical and Empirical Power of Regression and Maximum-Likelihood Methods to Map Quantitative Trait Loci in General Pedigrees. American Journal of Human Genetics 75(1):17-26, 2004 [PDF]
 Macgregor S, Visscher PM, Knott SA, Thomson P, Porteous DJ, Millar JK, Devon RS, Blackwood DHR, Muir WJ: A genome scan and follow-up study identify a bipolar disorder susceptibility locus on chromosome 1q42. Molecular Psychiatry 9(12):1083-1090, 2004 [PDF]
 Visscher PM: Power of the classical twin design revisited. Twin Research 7(5):505-512, 2004 [PDF]
 Visscher PM, Wray NR: Conventional Multipoint Nonparametric Linkage Analysis is not Necessarily Inherently Biased. American Journal of Human Genetics 75(4):718-720, 2004 [PDF]
 Visscher PM, Benyamin B, White I: The Use of Linear Mixed Models to Estimate Variance Components from Data on Twin Pairs by Maximum Likelihood. Twin Research 7(6):670-674, 2004 [PDF] [PubMed]
 Schousboe K, Visscher PM, Erbas B, Kyvik KO, Hopper JL, Henriksen JE, Heitmann BL, S?rensen TIA: Twin Study of Genetic and Environmental Influences on Adult Body Size, Shape and Composition. International Journal of Obesity 28(1):39-48, 2004 [PDF]
 Thomas S, Porteous D, Visscher PM: Efficiency of Direct Haplotyping versus Genotyping in Association Studies. Genetic Epidemiology 26(2):116-124, 2004 [PDF]
 Nsengimana J, Baret PV, Haley CS, Visscher PM: Linkage disequilibrium in the domesticated pig. Genetics 166(3):1395-1404, 2004 [PDF]
 Deary IJ, Whiteman MC, Pattie A, Starr JM, Hayward C, Wright AF, Visscher PM, Tynan MC, Whalley LJ: Apolipoprotein E gene variability and cognitive functions at age 79: Follow up of the Scottish Mental Survey 1932. Psychology and Aging 19(2):367-371, 2004 [PDF]
2003
 Tenesa A, Knott SA, Carothers A, Williams JL, Smith D, Visscher PM: Estimation of linkage disequilibrium in a sample of the United Kingdom dairy cattle population using unphased genotypes. Journal of Animal Science 81(3):617-623, 2003 [PDF]
 Nagamine Y, Haley CS, Sewalem A, Visscher PM: QTL variation for growth and obesity between and within lines of pigs (Sus Scrofa). Genetics 164(2):629-635, 2003 [PDF]
 Visscher PM, Le Hellard S: A Simple Method to Analyse SNP-based Association Studies Using DNA Pools. Genetic Epidemiology 24(4):291-296, 2003 [PDF]
 Visscher PM, Tynan M, Whiteman MC, Pattie A, White I, Hayward C, Wright AF, Starr JM, Whalley LJ, Deary IJ: Lack of association between polymorphisms in angiotensin-converting-enzyme and methylenetetrahydrofolate reductase genes and normal cognitive ageing in humans. Neuroscience Letters 347(3):175-178, 2003 [PDF]
 Hernandez-Sanchez J, Visscher PM, Plastow G, Haley CS: Candidate gene analysis for quantitative traits using the transmission disequilibrium test: The example of the Melanocortin 4-Receptor in pigs. Genetics 164(2):637-644, 2003 [PDF]
 Macgregor S, Knott SA, White I, Visscher PM, Framingham Heart Study: Longitudinal variance-components analysis of the Framingham Heart Study data. BMC Genetics 4(Suppl. 1): 2003 [PDF] [PubMed]
 Schousboe K, Visscher PM, Henriksen JE, Hopper JL, S?rensen TIA, Kyvik KO: Twin Study of Genetic and Environmental Influences on Glucose Tolerance and Indices of Insulin Sensitivity and Secretion. Diabetologia 46(9):1276-1283, 2003 [PDF]
 Segurado R, Detera-Wadleigh SD, Levinson DF, Lewis CM, Gill M, Nurnberger JI Jr, Craddock N, DePaulo JR, Baron M, Gershon ES, Ekholm J, Cichon S, Turecki G, Claes S, Kelsoe JR, Schofield PR, Badenhop RF, Morissette J, Coon H, Blackwood DHR, McInnes LA, Foroud T, Edenberg HJ, Reich T, Rice JP, Goate A, McInnis MG, McMahon FJ, Badner JA, Goldin LR, Bennett P, Willour VL, Zandi PP, Liu J, Gilliam C, Juo SH, Berrettini WH, Yoshikawa T, Peltonen L, Lonnqvist J, Nothen MM, Schumacher J, Windemuth C, Rietschel M, Propping P, Maier W, Alda M, Grof P, Rouleau GA, Del-Favero J, Van Broeckhoven C, Mendlewicz J, Adolfsson R, Spence MA, Luebbert H, Adams LJ, Donald JA, Mitchell PB, Barden N, Shink E, Byerley W, Muir W, Visscher PM, Macgregor S, Gurling H, Kalsi G, McQuillin A, Escamilla MA, Reus VI, Leon P, Freimer NB, Ewald H, Kruse TA, Mors O, Radhakrishna U, Blouin JL, Antonarakis SE, Akarsu N: Genome scan meta-analysis of schizophrenia and bipolar disorder, part III: Bipolar disorder. American Journal of Human Genetics 73(1):49-62, 2003 [PDF] [PubMed]
 Hernandez-Sanchez J, Haley CS, Visscher PM: Power of QTL detection using assocation tests with family controls. European Journal of Human Genetics 11(11):819-827, 2003 [PDF]
 Tenesa A, Knott SA, Carothers A, Visscher PM: Power of linkage disequilibrium maping to detect a quantitative trait locus (QTL) in selected samples of unrelated individuals. Annals of Human Genetics 67:557-566, 2003 [PDF]
 Hayes B, Visscher PM, McPartlan H, Goddard ME: Novel multi-locus measure of linkage disequilibrium to estimate past effective population size. Genome Research 13(4):635-643, 2003 [PDF]
2002
 Villanueva B, Verspoor E, Visscher PM: Parental assignment in fish using microsatellite genetic markers with finite numbers of parents and offspring. Animal Genetics 33(1):33-41, 2002 [PDF]
 Seaton G, Knott SA, Kearsey MJ, Haley CS, Visscher PM: QTL Express: user-friendly software to map quantitative trait loci in outbred populations. Bioinformatics 18(2):339-340, 2002 [PDF]
 Walling GA, Haley CS, Perez-Enciso M, Thompson R, Visscher PM: On the mapping of QTL at marker and non-marker locations. Genetical Research 79(1):97-106, 2002 [PDF]
 Jaffrezic F, White IMS, Thompson R, Visscher PM: Contrasting models for lactation curve analysis. Journal of Dairy Science 85(4):968-975, 2002 [PDF]
 Nagamine Y, Knott SA, Visscher PM, Haley CS: Simple deterministic identity-by-descent coefficients and estimation of QTL allelic effects in full and half-sibs. Genetical Research 80(3):237-243, 2002 [PDF]
 Visscher PM: Increased rate of twins among affected sib pairs. American Journal of Human Genetics 71(4):995-996, 2002 [PDF]
 Visscher PM, Haley CS, Knott SA: In: Statistical modelling and analysis of genetic data. Journal of the Royal Statistical Society Series B : Statistical Methodology 737-775, 2002 [PDF]
 Macgregor S, Visscher PM, Knott S, Porteous D, Muir W, Millar K, Blackwood D: Is schizophrenia linked to chromosome 1q? Science 298(5602):2277, 2002 [PDF] [PubMed]
 Slate J, Visscher PM, Macgregor S, Stevens D, Tate ML, Pemberton JM: A Genome Scan for Quantitative Trait Loci in a Wild Population of Red Deer (Cervus elaphus). Genetics 162(4):1863-1873, 2002 [PDF]
 Yazdi MH, Visscher PM, Ducrocq VP, Thompson R: Heritability, Reliability of Genetic Evaluations and Response to Selection in Proportional Hazard Models. Journal of Dairy Science 85(6):1563-1577, 2002 [PDF]
 Le Hellard S, Ballereau SJ, Visscher PM, Torrance HS, Pinson J, Morris SW, Thomson ML, Semple CAM, Muir WJ, Blackwood DHR, Porteous DJ, Evans KL: SNP genotyping on pooled DNAs: comparison of genotyping technologies and a semi automated method for data storage. Nucleic Acids Research 30(15):e741-10, 2002 [PDF]
 Argente MJ, Blasco A, Ortega JA, Haley CS, Visscher PM: Analyses for the presence of a major genen affecting uterine capacity in unilaterallly ovariectomised rabbits. Genetics 163(3):1061-1068, 2002 [PDF]
 Visscher PM, Woolliams JA, Smith D, Williams J: Estimation of the pedigree error rate in the UK dairy population using microsatellite markers and the impact on selection. Journal of Dairy Science 85(9):2368-2375, 2002 [PDF]
2001
 Visscher PM, Smith D, Hall SJG, Williams JL: A viable herd of genetically uniform cattle. Nature 409(6818):303-303, 2001 [PDF]
 Visscher PM, Haley CS: True and false positive peaks in genomewide scans: The long and the short of it. Genetic Epidemiology 20:409-14, 2001 [PDF]
 Visscher PM, Hopper JL: Power of regression and maximum likelihood methods to map QTL from sib-pair and DZ twin data. Annals of Human Genetics 65:583-601, 2001 [PDF]
 Visscher PM, Yazdi MH, Jackson AD, Schalling M, Lindblad K, Yuan QP, Porteous D, Muir WJ, Blackwood DHR: Genetic Survival Analysis of Age-at-Onset of Bipolar Disorder. Evidence for Anticipation or a cohort Effect in Families. Psychiatric Genetics 11(3):129-137, 2001 [PDF]
 Blackwood DHR, Visscher PM, Muir WJ: Genetic studies of bipolar affective disorder in large families. British Journal of Psychiatry 178(Suppl. 41):S134-S136, 2001 [PDF]
 Roughsedge T, Brotherstone S, Visscher PM: Bias and power in the estimation of a maternal family variance component in the presence of incomplete and incorrect pedigree information. Journal of Dairy Science 84(4):944-950, 2001 [PDF]
2000
 Visscher PM, Whittaker JC, Jansen RC: Mapping multiple QTL of different effects: comparison of a simple sequential testing strategy and multiple QTL mapping. Molecular Breeding 6:11-24, 2000 [PDF]
 Lubbers R, Brotherstone S, Ducrocq VP, Visscher PM: A comparison of a linear and proportional hazards approach to analyse discrete longevity data in dairy cows. Animal Science 70:197-206, 2000 [PDF]
 George AW, Visscher PM, Haley CS: Mapping quantitative trait loci in complex pedigrees: A two step variance component approach. Genetics 156(4):2081-2092, 2000 [PDF]
 Roughsedge T, Brotherstone S, Visscher PM: Effects of cow families on type traits in dairy cattle. Animal Science 70:391-398, 2000 [PDF]
 Walling GA, Visscher PM, Andersson L, Rothschild MF, Wang L, Moser G, Groenen MAM, Bidanel JP, Cepica S, Archibald AL, Geldermann H, De Koning DJ, Milan D, Haley CS: Combined Analyses of Data From Quantitative Trait Loci Mapping Studies: Chromosome 4 Effects on Porcine Growth and Fatness. Genetics 155(3):1369-1378, 2000 [PDF]
 Visscher PM, Pong-Wong R, Whittemore CT, Haley CS: Impact of biotechnology on pig (cross)breeding programmes. Livestock Production Science 65:57-70, 2000 [PDF]
 Roughsedge T, Visscher PM, Brotherstone S: Effects of cow families on production traits in dairy cattle. Animal Science 71:49-57, 2000 [PDF]
1999
 Roughsedge T, Brotherstone S, Visscher PM: Estimation of variance of maternal lineage effects at the Langhill dairy herd. Animal Science 68:79-86, 1999 [PDF]
 Visscher PM: Speedcongenics: accelerated genome recovery using genetic markers. Genetical Research 74(1):81-85, 1999 [PDF]
 Slate J, Pemberton JM, Visscher PM: Power to detect QTL in a free-living polygynous ruminant population. Heredity 83:327-336, 1999 [PDF]
 Visscher PM, Haley CS: On the efficiency of marker-assisted introgression. Animal Science 68:59-68, 1999 [PDF]
 Visscher PM, Haley CS, Heath SC, Muir WJ, Blackwood DHR: Detecting QTLs for uni and bipolar disorder using a variance component method. Psychiatric Genetics 9(2):75-84, 1999 [PDF]
 Roughsedge T, Brotherstone S, Visscher PM: Quantifying genetic contributions to a dairy cattle population using pedigree analysis. Livestock Production Science 60(2-3):359-369, 1999 [PDF]
1998
 Visscher PM: On the sampling variance of intraclass correlations and genetic correlations. Genetics 149(3):1605-1614, 1998 [PDF]
 Walling G, Visscher PM, Haley CS: A comparison of bootstrap methods to construct confidence intervals in QTL mapping. Genetical Research 71(2):171-180, 1998 [PDF]
 Visscher PM, Haley CS: Power of a chromosomal test to detect genetic variation using genetic markers. Heredity 81:317-326, 1998 [PDF]
 Lebreton CM, Visscher PM, Haley CS, Semikhodskii A, Quarrie SA: A Nonparametric Bootstrap Method for Testing Close Linkage vs. Pleiotropy of Coincident Quantitative Trait Loci. Genetics 150(2):931-943, 1998 [PDF]
 Lebreton CM, Visscher PM: Empirical nonparametric bootstrap strategies in quantitative trait loci mapping: Conditioning on the genetic model. Genetics 148(1):525-535, 1998 [PDF]
 Haley CS, Visscher PM: Strategies to utilise marker-QTL information. Journal of Dairy Science 81(Suppl. 2):85-97, 1998 [PDF]
 Baret PV, Knott SA, Visscher PM: On the use of regression and maximum likelihood for QTL mapping in halfsib designs. Genetical Research 72(2):149-158, 1998 [PDF]
 Walling GA, Archibald AL, Cattermole JA, Downing AC, Finlayson HA, Nicholson D, Visscher PM, Walker CA, Haley CS: Mapping of quantitative trait loci on porcine chromosome 4. Animal Genetics 29(6):415-424, 1998 [PDF]
 De Koning DJ, Visscher PM, Knott SA, Haley CS: A strategy for QTL detection in half sib populations. Animal Science 67:257-268, 1998 [PDF]
1997
 Van Heelsum AM, Visscher PM, Haley CS: Marker assisted introgression using non-unique marker alleles. I. Selection on presence of linked marker alleles. Animal Genetics 28(3):181-187, 1997 [PDF]
 Van Heelsum AM, Haley CS, Visscher PM: Marker assisted introgression using non-unique marker alleles. II. Selection on probability of presence of the introgressed allele. Animal Genetics 28(3):188-194, 1997 [PDF]
 Visscher PM, Mackinnon M, Haley CS: Efficiency of marker-assisted selection. Animal Biotechnology 8(1):99-106, 1997 [PDF]
1996
 Bowman P, Visscher PM, Goddard ME: Customized selection indices for dairy bulls in Australia. Animal Science 62:393-403, 1996 [PDF]
 Visscher PM, Haley CS: Detection of putative quantitative trait loci in line crosses under infinitesimal genetic models. Theoretical and Applied Genetics 93(5-6):691-702, 1996 [PDF]
 Visscher PM, Haley CS, Knott SA: Mapping QTLs for binary traits in backcross and F2 populations. Genetical Research 68(1):55-63, 1996 [PDF]
 Visscher PM, Haley CS, Thompson R: Marker Assisted Introgression in Backcross Breeding Programs. Genetics 144(4):1923-1932, 1996 [PDF]
 Visscher PM: Proportion of the variation in genetic composition in backcrossing programs explained by genetic markers. Journal of Heredity 87(2):136-138, 1996 [PDF]
 Visscher PM, Thompson R, Haley CS: Confidence intervals in QTL mapping by bootstrapping. Genetics 143(2):1013-1020, 1996 [PDF]
 Whittaker JC, Thompson R, Visscher PM: On the mapping of QTL by regression of phenotype on marker-type. Heredity 77:23-32, 1996 [PDF]
1995
 Visscher PM, Goddard ME: Genetic parameters for Milk Yield, Survival Workability, and type traits for Australian Dairy Cattle. Journal of Dairy Science 78(1):205-220, 1995 [PDF]
 Visscher PM: Bias in multiple genetic correlation from half-sib designs. Genetics Selection Evolution 27(4):335-345, 1995 [PDF]
 Visscher PM, Thompson R: Haplotype frequencies of linked loci in backcross populations derived from inbred lines. Heredity 75:644-649, 1995 [PDF]
 Visscher PM, Goddard ME: Genetic analyses of profit for Australian Dairy Cattle. Animal Science 61:9-18, 1995 [PDF]
 Visscher PM, Haley CS: Utilizing genetic markers in pig breeding programmes. Animal Breeding Abstracts 63:1-8, 1995 [PDF]
1994
 Visscher PM, Bowman P, Goddard ME: Breeding objectives for pasture based dairy production systems. Livestock Production Science 40(2):123-137, 1994 [PDF]
 Thompson R, Crump RE, Juga Y, Visscher PM: Bivariate animal models using scaling and transformation. Genetics Selection Evolution 27(1):33-42, 1994 [PDF]
1993
 Visscher PM, Goddard ME: Fixed and random contemporary groups. Journal of Dairy Science 76(5):1444-1454, 1993 [PDF]
1992
 Visscher PM, Hill WG: Heterogeneity of variance and dairy cattle breeding. Animal Production 55:321-329, 1992 [PDF]
 Visscher PM, Thompson R: Comparisons between genetic variances estimated from different types of relatives in dairy cattle. Animal Production 55:315-320, 1992 [PDF]
 Visscher PM, Thompson R: Univariate and multivariate parameter estimates for milk production traits using an animal model. I. Description and results of REML analyses. Genetics Selection Evolution 24(5):415-430, 1992 [PDF]
 Visscher PM: Power of likelihood ratio tests for heterogeneity of intraclass correlation and variance in balanced half-sib designs. Journal of Dairy Science 75(5):1320-1330, 1992 [PDF]
 Visscher PM, Hill WG, Thompson R: Univariate and multivariate parameter estimates for milk production traits using an animal model. II Efficiency of selection when using simplified covariance structures. Genetics Selection Evolution 24(5):431-447, 1992 [PDF]
1991
 Visscher PM: On the estimation of variances within herd-mean production groups. Journal of Dairy Science 74(6):1987-1992, 1991 [PDF]
 Visscher PM, Thompson R, Hill WG: Estimation of genetic and environmental variances for fat yield in individual herds and an investigation into heterogeneity of variance between herds. Livestock Production Science 28(4):273-290, 1991 [PDF]
 
Book Chapters
2007
 Wray NR, Visscher PM: Mapping common disease genes. In: Wright A,Hastie N, eds. Genes and common diseases - genetics in modern medicine: Cambridge University Press, 2007. [PDF unavailable]
2003
 Porteous DJ, Evans KL, Millar JK, Pickard BS, Thomson PA, James R, Macgregor S, Wray NR, Visscher PM, Muir WJ, Blackwood DHR: Genetics of Schizophrenia and Bipolar Affective Disorder: Strategies to Identify Candidate Genes. [PDF]
2002
 Hopper JL, Visscher PM: Variance Component Analysis. In: Biostatistical Genetics and Genetic Epidemiology, RC Elston, JM Olson and L Palmer (Eds.), London: John Wiley & Sons, pp., 788, 2002. [PDF unavailable]
 Hopper JL, Visscher PM: Genetic correlations and covariance. In: Biostatistical Genetics and Genetic Epidemiology, RC Elston, JM Olson and L Palmer (Eds.), London: John Wiley & Sons, pp., 331, 2002. [PDF unavailable]
1998
 Visscher PM, Van der Beek S, Haley CS: Marker Assisted Selection. In: Animal Breeding: Technology for the 21st Century, AJ Clark (Ed.), Sydney: Harwood Academic Publishers, 1998. [PDF unavailable]
 Visscher PM, Haley CS: Marker Assisted Selection in Commercial Pig Breeding Programmes. In: Progress in Pig Science, J Wiseman, MA Varley and JP Chadwick (Eds.), Nottingham: Nottingham University Press, 1998. [PDF unavailable]