| Class | Global |
| Name | show map |
| Arguments | [<loc1> [-- | to <loc2> ... <locN>] |
| position <map_pos1> [-- | to] [<map_pos2> ...] |
Shows the current marker map. A subset of loci can be referred to by their names, a range of names, an index in the list of loci (1..N), or range of indices. A range may be open ended, in which case it extends to the end of the list of loci.
The position modifier allows subsetting by a range of map positions. Map positions take the form <chr>:<coordinate> or chrXX <coordinate>. If a chromosome is not specified for a given map position, then the chromosome for the previous map position is used. A map interval may be open ended, in which case it extends to the end of the chromosome.
Example:
>> show map User specified marker map: Marker Pos (cM ) Theta Chrom ---------------- ------------ ----- ----- D16S769 53.713000 0.001 16 26066263 (chr 16) D16S3145 55.012000 0.013 16 26784604 (chr 16) D16S753 60.125000 0.049 16 31181005 (chr 16) D16S409 60.998000 0.009 16 47333369 (chr 16) D16S411 62.226000 0.012 16 48294236 (chr 16) D16S419 67.694000 0.052 16 51510863 (chr 16) D16S415 69.148000 0.014 16 52228236 (chr 16) D16S771 70.852000 0.017 16 53066505 (chr 16) >> show map pos chr16 60 -- 68 70 -- >> show map 4 -- 7 9 [Both give:] User specified marker map: Marker Pos (cM ) Theta Chrom ---------------- ------------ ----- ----- D16S753 60.125000 0.001 16 31181005 (chr 16) D16S409 60.998000 0.009 16 47333369 (chr 16) D16S411 62.226000 0.012 16 48294236 (chr 16) D16S419 67.694000 0.052 16 51510863 (chr 16) D16S771 70.852000 0.031 16 53066505 (chr 16)
See also:
| read map <fil> | read map, guessing format |
| set distances <dis12> <dis23>...<disN-1N> | set marker map |
| set map <pos1>...<posN> | set marker map |
| << (show ids) | Up to index | >> (show macros) |