Sib-pair Command: set distances


ClassData Declaration command
Nameset distances
Arguments <dis1_2> <dis2_3>...<posN-1_N>.

Set interlocus map distances map positions for the marker loci. Distances are in centiMorgans. This will overwrite any original map positions.

Example:

>> include cavanaughex.in
>> show map

User specified marker map:

Marker         Pos (cM)   Theta
-----------    --------   -----
D16S769           53.71   0.329   26066263 (chr 16)
D16S3145          55.01   0.013   26784604 (chr 16)
D16S753           60.12   0.049   31181005 (chr 16)
D16S409           61.00   0.009   47333369 (chr 16)
D16S411           62.23   0.012   48294236 (chr 16)
D16S419           67.69   0.052   51510863 (chr 16)
D16S415           69.15   0.014   52228236 (chr 16)
D16S771           70.85   0.017   53066505 (chr 16)

>> set distances 5 5 5 1 5 2 2
>> show map

User specified marker map:

Marker         Pos (cM)   Theta
-----------    --------   -----
D16S769            0.00   0.001   26066263 (chr 16)
D16S3145           5.00   0.048   26784604 (chr 16)
D16S753           10.00   0.048   31181005 (chr 16)
D16S409           15.00   0.048   47333369 (chr 16)
D16S411           16.00   0.010   48294236 (chr 16)
D16S419           21.00   0.048   51510863 (chr 16)
D16S415           23.00   0.020   52228236 (chr 16)
D16S771           25.00   0.020   53066505 (chr 16)


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