Sib-pair Command: set map function


ClassGlobal
Nameset map function
Arguments kosambi | haldane

Set the mapping function used by multipoint analytic and locus file output routines.

Example:

>> declare loci 5m
>> set map 0 5 10 16 32
>> show map

User specified marker map:

Marker         Pos (cM)   Theta
-----------    --------   -----
mar1               0.00   0.001
mar2               5.00   0.048
mar3              10.00   0.048
mar4              16.00   0.057
mar5              32.00   0.137

>> set map function kosambi

NOTE:  Using Kosambi mapping function.

>> show map

User specified marker map:

Marker         Pos (cM)   Theta
-----------    --------   -----
mar1               0.00   0.001
mar2               5.00   0.050
mar3              10.00   0.050
mar4              16.00   0.060
mar5              32.00   0.155

See also:

show mapshow linkage map


Sib-pair Command: set map


ClassData Declaration command
Nameset map
Arguments <pos1>...<posN>.

Set map positions for the marker loci. This will overwrite any original map positions.

Example:

>> set locus m{1 2 3 4 5} marker
>> set map 0 5 10 16 32
>> sho map

User specified marker map:

Marker         Pos (cM)   Theta
-----------    --------   -----
m1                 0.00   0.001                                           
m2                 5.00   0.048                                           
m3                10.00   0.048                                           
m4                16.00   0.057                                           
m5                32.00   0.137                                           


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