Sib-pair Command: show loci


ClassGlobal
Nameshow loci
Arguments

List of active loci along with table of numbers available.

Example:

>> include cavanaughex.in
>> show loci 

mar: 8  qua: 0  aff: 1

Locus           Type          Position   Typed
--------------- ----  ----------------  ------------
ibd              a          6              231 (100.0%)
D16S769          m          7--      8     204 ( 88.3%)   26066263 (chr 16)
D16S3145         m          9--     10     215 ( 93.1%)   26784604 (chr 16)
D16S753          m         11--     12     219 ( 94.8%)   31181005 (chr 16)
D16S409          m         13--     14     213 ( 92.2%)   47333369 (chr 16)
D16S411          m         15--     16     215 ( 93.1%)   48294236 (chr 16)
D16S419          m         17--     18     217 ( 93.9%)   51510863 (chr 16)
D16S415          m         19--     20     210 ( 90.9%)   52228236 (chr 16)
D16S771          m         21--     22     212 ( 91.8%)   53066505 (chr 16)

Mean number of usable values  =     215.1 ( 93.1%)

 Intvl Midpt    Count   Histogram (Nobs=9)
 ---------------------------------------------------------
        204.0       1   *
        210.0       1 | *
        212.4       2 + **
        215.8       3 + ***
        219.0       1   *
        222.6       0
        225.9       0
        231.0       1   *

See also:

eval (ls) Locus listing from Scheme
infoprogram information
ls List loci
show idstabulate IDs
show macroslist macros
show mapshow linkage map
show pedigreestabulate pedigrees
whichlist positions of loci


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