| Class | Global |
| Name | set tdt |
| Arguments | bot[h parents]|one [parent]|first |
Limits TDT statistic to cases where either both parents or at least one parent is typed, or one proband per family where both parents typed.
Example:
>> include linclex.in >> keep lincl D13S160 >> tdt lincl ------------------------------------------------ TDT for trait "lincl" v. all markers ------------------------------------------------ Marker Typed NParam Chi-square Asy P Emp P Iters ---------- ------ ------ ---------- ------ ------ ------ D13S160 14 6 24.0 0.0000 0.0000 0 TDT-Best *** D13S160 14 7 26.0 0.0005 0.0005 2001 TDT-All ** D13S160 14 5 38.6 0.0000 0.0000 0 TDT-Ewens *** D13S160 14 1 31.0 0.0000 0.0050 201 TDT-Gtp *** >> set tdt first NOTE: Only one index case per pedigree used -- both parents must be typed. >> tdt lincl ------------------------------------------------ TDT for trait "lincl" v. all markers ------------------------------------------------ Marker Typed NParam Chi-square Asy P Emp P Iters ---------- ------ ------ ---------- ------ ------ ------ D13S160 10 6 16.0 0.0002 0.0002 0 TDT-Best ** D13S160 10 7 18.0 0.0120 0.0015 2001 TDT-All * D13S160 10 5 25.6 0.0001 0.0001 0 TDT-Ewens ** D13S160 10 1 20.6 0.0000 0.0050 201 TDT-Gtp ***
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