Sib-pair Command: set sml

Nameset sml
Arguments <Frequency of A allele> <Penetrance of AA genotype> <Penetrance of AB genotype> <Penetrance of BB genotype>

Set the default single major locus model written to locus files for programs that require such information for a trait locus eg Linkage format locus file. Information is also used by some Sib-pair commands (eg simulate qtl). Usual default is a dominant model p=0.05, pen={0.50, 0.50, 0.05}.


# Make default model a rare recessive
set sml 0.001 1 0 0

<< (set fbatimpute)Up to index>> (set tdt)