| Class | Data Declaration command |
| Name | set chromosomes |
| Arguments | <chr1> [...<chrN>]. |
Assign each marker locus to a specific chromosome. If there are more markers than specified chromosomes, the last specified chromosome is reused.
Example:
>> include cavanaughex.in >> show map User specified marker map: Marker Pos (cM) Theta Chrom ----------- -------- ----- ----- D16S769 53.71 0.329 16 26066263 (chr 16) D16S3145 55.01 0.013 16 26784604 (chr 16) D16S753 60.12 0.049 16 31181005 (chr 16) D16S409 61.00 0.009 16 47333369 (chr 16) D16S411 62.23 0.012 16 48294236 (chr 16) D16S419 67.69 0.052 16 51510863 (chr 16) D16S415 69.15 0.014 16 52228236 (chr 16) D16S771 70.85 0.017 16 53066505 (chr 16) >> set chr 2 2 2 2 1 1 1 1 >> sho map User specified marker map: Marker Pos (cM) Theta Chrom ----------- -------- ----- ----- D16S769 53.71 0.329 2 26066263 (chr 16) D16S3145 55.01 0.013 2 26784604 (chr 16) D16S753 60.12 0.049 2 31181005 (chr 16) D16S409 61.00 0.009 2 47333369 (chr 16) D16S411 62.23 0.012 1 48294236 (chr 16) D16S419 67.69 0.052 1 51510863 (chr 16) D16S415 69.15 0.014 1 52228236 (chr 16) D16S771 70.85 0.017 1 53066505 (chr 16) >> order $mm >> sho map User specified marker map: Marker Pos (cM) Theta Chrom ----------- -------- ----- ----- D16S411 62.23 0.356 1 48294236 (chr 16) D16S419 67.69 0.052 1 51510863 (chr 16) D16S415 69.15 0.014 1 52228236 (chr 16) D16S771 70.85 0.017 1 53066505 (chr 16) D16S769 53.71 0.500 2 26066263 (chr 16) D16S3145 55.01 0.013 2 26784604 (chr 16) D16S753 60.12 0.049 2 31181005 (chr 16) D16S409 61.00 0.009 2 47333369 (chr 16)
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