Class | Analysis and data manipulation command |
Name | test haploid |
Arguments | [mitochondrial] |
Uses Y-chromosome or mitochondrial markers to test the putative relationships of genotyped individuals. Default is to treat haplotypes as Y-chromosomal.
Example:
>> set loc a haploid >> read ped inline 1 1 x x m 3/3 1 2 x x f x/x 1 3 1 2 f 2/3 1 4 1 2 m 3/3 1 5 1 2 m 3 3 1 6 1 2 m 4 4 ;;;; >> run >> test haploid There are 1 eligible haploid markers. NOTE: 1--3 is female and is typed at 1 Y-chromosome loci. Pedigree Person1 Person2 Relation Marker All1 All2 ------------ ------------ ------------ -------- ------------- ---- ---- 1 1 6 Paternal a 3 4 1 4 6 Fraternal a 3 4 1 5 6 Fraternal a 3 4 Locus Incon Compared Prop N Peds ------------ ------ -------- ------ -------- a 3 6 0.5000 1 >> test hap mit There are 1 eligible haploid markers. Pedigree Person1 Person2 Relation Marker All1 All2 ------------ ------------ ------------ -------- ------------- ---- ---- 1 3 4 Sibling a 2 3 1 3 5 Sibling a 2 3 1 3 6 Sibling a 2 4 1 4 6 Sibling a 3 4 1 5 6 Sibling a 3 4 Locus Incon Compared Prop N Peds ------------ ------ -------- ------ -------- a 5 6 0.8333 1
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