Sib-pair Command: test haploid


ClassAnalysis and data manipulation command
Nametest haploid
Arguments [mitochondrial]

Uses Y-chromosome or mitochondrial markers to test the putative relationships of genotyped individuals. Default is to treat haplotypes as Y-chromosomal.

Example:

>> set loc a haploid
>> read ped inline
1 1 x x m 3/3
1 2 x x f x/x
1 3 1 2 f 2/3
1 4 1 2 m 3/3
1 5 1 2 m 3 3
1 6 1 2 m 4 4
;;;;
>> run
>> test haploid

There are    1 eligible haploid markers.

NOTE:  1--3 is female and is typed at 1 Y-chromosome loci.

Pedigree     Person1      Person2      Relation  Marker              All1 All2
------------ ------------ ------------ --------  -------------       ---- ----
1            1            6            Paternal  a                      3   4
1            4            6            Fraternal a                      3   4
1            5            6            Fraternal a                      3   4

Locus         Incon   Compared  Prop    N Peds
------------  ------  -------- ------  --------
a                  3         6 0.5000         1

>> test hap mit

There are    1 eligible haploid markers.


Pedigree     Person1      Person2      Relation  Marker              All1 All2
------------ ------------ ------------ --------  -------------       ---- ----
1            3            4            Sibling   a                      2   3
1            3            5            Sibling   a                      2   3
1            3            6            Sibling   a                      2   4
1            4            6            Sibling   a                      3   4
1            5            6            Sibling   a                      3   4

Locus         Incon   Compared  Prop    N Peds
------------  ------  -------- ------  --------
a                  5         6 0.8333         1



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