Sib-pair Command: test sex


ClassAnalysis and data manipulation command
Nametest sex
Arguments

Uses X-chromosome and/or Amelogenin, along with the presence or absence of Y-chromosome data for an individual, to test the putative sexes of genotyped individuals. Absence of Y-chromosome data for an individual is ambiguous, so a likelihood is not calculated.

Example:

>> test sex 

Pedigree     Individual  Sex  Post.Pr(M)   X-marker hets
------------ ----------  ---  ----------   --------------
04620        0462030      f    1.000000       0/  19
09901        0990151      f    1.000000       0/  19
10157        1015704      m    0.000000      14/  19
23204        2320403      m    0.000000      16/  18
25122        2512203      m    0.000000      13/  19
25122        2512204      f    1.000000       0/  19
29344        2934401      f    1.000000       1/  19
29344        2934450      m    0.000000      12/  19
32802        3280203      m    0.000000      14/  19
32802        3280204      f    1.000000       0/  19

Designated     Sex inferred via sex-linked markers
Sex          Likely Male    Uncertain   Likely Female
----------   -----------    ---------   -------------
 Male             721          1806             5
 Unknown            0           145             0
 Female             5          2136           811


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