| Class | Analysis and data manipulation command |
| Name | test sex |
| Arguments |
Uses X-chromosome and/or Amelogenin, along with the presence or absence of Y-chromosome data for an individual, to test the putative sexes of genotyped individuals. Absence of Y-chromosome data for an individual is ambiguous, so a likelihood is not calculated.
Example:
>> test sex Pedigree Individual Sex Post.Pr(M) X-marker hets ------------ ---------- --- ---------- -------------- 04620 0462030 f 1.000000 0/ 19 09901 0990151 f 1.000000 0/ 19 10157 1015704 m 0.000000 14/ 19 23204 2320403 m 0.000000 16/ 18 25122 2512203 m 0.000000 13/ 19 25122 2512204 f 1.000000 0/ 19 29344 2934401 f 1.000000 1/ 19 29344 2934450 m 0.000000 12/ 19 32802 3280203 m 0.000000 14/ 19 32802 3280204 f 1.000000 0/ 19 Designated Sex inferred via sex-linked markers Sex Likely Male Uncertain Likely Female ---------- ----------- --------- ------------- Male 721 1806 5 Unknown 0 145 0 Female 5 2136 811
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