|Class||Data Declaration command|
|Arguments||<data file name> ped_id|
Reads only the IDs from a VCF file header and sets up the corresponding pedigree in memory. If the ped_id modifier is present, the ID is split to give a pedigree and individual ID. Neither the marker names nor genotype data are read from the VCF file.
clear read loc vcf simple.vcf.gz sum get R2 keep where test >= 0.8 pack read vcf simple.vcf.gz merge vcf simple.vcf.gz
|merge vcf||merge VCF genotype data|
|<< (read cases)||Up to index||>> (read hapmap)|