Summary of eQTL database
| Release date | cis and/or trans eQTLs | P-value threshold used to identify cis eQTLs | P-value threshold used to identify trans eQTLs | r2 threshold used to define sentinel eQTLs | r2 threshold used to identify eQTL proxies |
|---|---|---|---|---|---|
| 2016-04-13 | cis and trans | Varied between eQTL studies (most used FDR<5%) | Varied between eQTL studies (most used FDR<5%) | <0.10 | >0.80 |
Individual cell types/tissues:
| Tissues/cells included | File name | eQTL datasets included |
|---|---|---|
| WHOLE-BLOOD | WHOLEBLOOD.20160413.eqtl.proxies.list | Battle_WHOLEBLOOD,GTeX_WHOLEBLOOD,Westra_WHOLEBLOOD |
Grouped by disease relevance:
| Tissues/cells included | File name | eQTL datasets included |
|---|---|---|
| ASTHMA | ASTHMA.20160413.eqtl.proxies.list | Andiappan_NEUTROPHILS,Battle_WHOLE-BLOOD,Battle_WHOLE-BLOOD_ase,Battle_WHOLE-BLOOD_splice,Brumpton_LCLS,Dimas_FIBROBLASTS,Dimas_LCLS,Dimas_TCELLS,Ding_LESIONAL-SKIN,Ding_NORMAL-SKIN,Ding_UNINVOLVED-SKIN,Dixon_LCLS,Fairfax_BCELLS,Fairfax_MONO,Geuvadis_LCLs,Grundberg_LCL,Grundberg_SKIN,GTE_FIBROBLASTS,GTE_LCLS,GTE_LUNG,GTE_SPLEEN,GTE_WHOLE-BLOOD,Hao_LUNG,Kim_MONOCYTES-Baseline,Kim_MONOCYTES-Differential,Kim_MONOCYTES-LPS,Luo_SMALL-AIRWAYS,Naranbhai_NEUTROPHILS,Westra_WHOLE-BLOOD,Zeller_PBMCS |