Sib-pair Command: numtyp|anytyp|alltyp

Class	Algebraic operators and function
Name	numtyp | anytyp | alltyp
Arguments

Show number of markers an individual is genotyped at, or indicate whether genotyped at any one or all marker loci.

Example:

>> set loc ntyp qua
Creating new variable "ntyp".
>> set loc atyp aff
Creating new variable "atyp".

>> ntyp=numtyp
Operating on pedigree file
Recoded    231 values.
>> atyp = anytyp
Operating on pedigree file
Recoded    231 values.

>> tab ntyp atyp
------------------------------------------------
Cross-tabulation of "ntyp" ... "atyp"
------------------------------------------------
                      atyp
ntyp               n            y
           --------------------------
   0.00000      5 (1.00)     0 (.000)
   1.00000      0 (.000)     2 (1.00)
   2.00000      0 (.000)     3 (1.00)
   3.00000      0 (.000)     3 (1.00)
   4.00000      0 (.000)     3 (1.00)
   5.00000      0 (.000)     2 (1.00)
   6.00000      0 (.000)     8 (1.00)
   7.00000      0 (.000)    22 (1.00)
   8.00000      0 (.000)   183 (1.00)

Sib-pair Command: male|female|isfou|isnon

Class	Algebraic operators and function
Name	male | female | isfou | isnon
Arguments

Test sex or founder status of individual.

Example:

>> count male

Count where "male":

Pedigree       Con=T   Num  ASPs Trios    4+
-------------- ----- ----- ----- ----- -----
         Total    96   231    13     1     0

Number of matched persons   =   96 out of   231 (41.6%)
Number of matched pedigrees =   54 out of    54 (100.0%)

>> clear
>> loc volgaex.in
>> set loc nonfounder aff
>> nonfounder = isnon
>> keep nonfounder
>> head

! p             s n
! e             e o
! d id  fat mot x n
!
AM  101 x   x   m n
AM  102 x   x   f n
AM  203 x   x   f n
AM  201 101 102 m y
AM  202 101 102 m y
AM  204 101 102 m y
AM  205 101 102 m y
AM  206 101 102 m y
AM  207 101 102 m y
AM  208 101 102 m y