| Class | Analysis and data manipulation command |
| Name | test locus |
| Arguments | [<marker 1>] [...<marker N>]] |
Carry out the usual Sib-pair Mendelian error screen on the specified locus and only on active pedigrees. Useful if checking was turned off when the pedigree was first read in.
Example:
>> set checking off
>> set imputation -1
>> set loc a marker
>> read ped inline
1 1 x x m 3/3
1 2 x x f x/x
1 3 1 2 f 2/4
;;;;
>> run
>> test locus a
NOTE: inconsistency due child 1-3 at locus a { 2/4 }
Locus "a"
------------------
Sibship: 1-1 x 1-2
Inconsistency between parent and child genotypes.
[1] (2)
3/3 x/x
| |
+=========+=========+
|
|
(3)
2/4
Pedigree Loci with Mendel errors
---------- -----------------------
1 1 100.0%
Locus Peds with Mendel errors
---------- -----------------------
a 1 100.0%
>> wri
Writing 1 pedigrees:
!
! S
! e
! x a
!
1 1 x x m 3/3
1 2 x x f x/x
1 3 1 2 f 2/4
>> set error_dropping on
>> test locus a
>> wri
Writing 1 pedigrees:
!
! S
! e
! x a
!
1 1 x x m x/x
1 2 x x f x/x
1 3 1 2 f x/x
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