Sib-pair Command: set mincount


ClassGlobal
Nameset mincount
Arguments <minimum numerator of P-value>

Controls the number used for Monte Carlo simulation of a P-value. Default is 20 pseudosamples with a test statistic more extreme than that for the observed statistic. Set mincount equal to iter if this is not desired.

Example:

>> include linclex.in
>> set mincount 
NOTE:  Minimum numerator for MC P-values     20
>> hwe
--------------------------------------------------
Hardy-Weinberg equilibrium for marker loci
--------------------------------------------------
Marker     Typed  Genos  Chi-square Asy P  Emp P  Iters
---------- ------ ------ ---------- ------ ------ ------
D13S162        66     36       23.9 0.6846 0.4444     45 HWE .
D13S160        66     21       15.0 0.4498 0.6250     32 HWE .
D13S170        58     66       68.3 0.1071 0.0199    201 HWE +

>> set mincount 100
NOTE:  Minimum numerator for MC P-values    100

>> hwe
--------------------------------------------------
Hardy-Weinberg equilibrium for marker loci
--------------------------------------------------

Marker     Typed  Genos  Chi-square Asy P  Emp P  Iters
---------- ------ ------ ---------- ------ ------ ------
D13S162        66     36       23.9 0.6846 0.3433    201 HWE .
D13S160        66     21       15.0 0.4498 0.6369    157 HWE .
D13S170        58     66       68.3 0.1071 0.0249    201 HWE +

>> set plevel 1
>> hwe

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