Class | Analysis |
Name | segregation |
Arguments | <marker> [unphased] |
Generates tabulation of parental versus offspring genotypes for a codominant marker. Of use in checking quality of a marker, segregation distortion or parent of origin effects. If the unphased modifier was included, the offspring genotypes are not phased.
For hypothesis testing, try the schaid and tdt commands.
Example:
>> seg ldl ------------------------------------------------ Segregation data for marker "ldl" ------------------------------------------------ NOTE: Phased genotypes inferred for offspring Pat Mat 1/1 1/2 2/1 2/2 ------- ------- ------- ------- ------- ------- 1/1 1/1 0 0 0 0 1/1 1/2 3 0 0 0 1/1 2/2 0 0 3 0 1/2 1/1 6 3 0 0 1/2 1/2 0 0 0 0 1/2 2/2 0 0 0 0 2/2 1/1 0 0 0 0 2/2 1/2 0 0 0 0 2/2 2/2 0 0 0 0
See also:
schaid | Schaid & Sommer HWE test |
tdt | several TDTs |
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