| Class | Analysis and data manipulation command |
| Name | mgt |
| Arguments | <quantitative trait> [<marker>] covariates [<cov1>...<covN] |
If a quantitative trait is specified, fits a variance components model testing for effects of alleles at a marker fitted as a fixed effect. Genotype doses are imputed for untyped pedigree members. Covariates can be included. Calculates the likelihood ratio test for association.
If a binary trait was specified, calculates the multifactorial threshold model likelihood ratio test of (total) association.
Example:
>> mgt adjChol ------------------------------------------------ Measured genotype analysis for trait "adjChol" ------------------------------------------------ Marker Typed Allels Chi-square Asy P -------------- ------ ------ ---------- ------ ldl 46 2 15.0 0.0001
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