Sib-pair Command: mgt

ClassAnalysis and data manipulation command
Arguments <quantitative trait> [<marker>] covariates [<cov1>...<covN]

If a quantitative trait is specified, fits a variance components model testing for effects of alleles at a marker fitted as a fixed effect. Genotype doses are imputed for untyped pedigree members. Covariates can be included. Calculates the likelihood ratio test for association.

If a binary trait was specified, calculates the multifactorial threshold model likelihood ratio test of (total) association.


>> mgt adjChol

Measured genotype analysis for trait "adjChol"

Marker         Typed  Allels Chi-square Asy P 
-------------- ------ ------ ---------- ------
ldl                46      2       15.0 0.0001

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