|Class||Analysis and data manipulation command|
|Arguments||<codominant marker> [ ... <codominant marker N>] [pairwise]|
Write the estimated mean identity-by-descent sharing at a marker or set of closely linked markers for all relative pairs in each pedigree as a lower triangular matrix or a list of pairs.
The single locus MCMC sampler is used to estimate pairwise IBD sharing at each marker. These estimates are combined as a weighted mean, with cases where IBD is known without error given infinite weight. This assumes that there were no recombination events between the markers in the set to be combined.
>> include linclex.in >> ibd D13S162 >> ibd D13S162 pairwise >> ibd D13S162 D13S160
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