Sib-pair Command: hwe

ClassAnalysis and data manipulation command
Arguments [founders] [<mar1>..[to]..<marN>] [$(m | x)].

Prints chi-square statistic for Hardy-Weinberg equilibrium for all marker loci. Analysis may be restricted to founders, and if the marker is diallelic, an exact test is carried out. If nonfounders are included, then a gene-dropping simulated P-value is produced. The mean IBS sharing for all typed matings is also calculated, and compared to its expected value. This latter test may allow detection of homogamy or assortment.


>> include
>> hwe 
>> set plevel 1
>> hwe 

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