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PMID |
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TITLE |
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Genetic variants in RBFOX3 are associated with sleep latency. |
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ABSTRACT |
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NlmCategory: UNASSIGNED |
Time to fall asleep (sleep latency) is a major determinant of sleep quality. Chronic, long sleep latency is a major characteristic of sleep-onset insomnia and/or delayed sleep phase syndrome. In this study we aimed to discover common polymorphisms that contribute to the genetics of sleep latency. We performed a meta-analysis of genome-wide association studies (GWAS) including 2 572 737 single nucleotide polymorphisms (SNPs) established in seven European cohorts including 4242 individuals. We found a cluster of three highly correlated variants (rs9900428, rs9907432 and rs7211029) in the RNA-binding protein fox-1 homolog 3 gene (RBFOX3) associated with sleep latency (P-values=5.77 × 10(-08), 6.59 × 10(-)(08) and 9.17 × 10(-)(08)). These SNPs were replicated in up to 12 independent populations including 30 377 individuals (P-values=1.5 × 10(-)(02), 7.0 × 10(-)(03) and 2.5 × 10(-)(03); combined meta-analysis P-values=5.5 × 10(-07), 5.4 × 10(-07) and 1.0 × 10(-07)). A functional prediction of RBFOX3 based on co-expression with other genes shows that this gene is predominantly expressed in brain (P-value=1.4 × 10(-316)) and the central nervous system (P-value=7.5 × 10(-)(321)). The predicted function of RBFOX3 based on co-expression analysis with other genes shows that this gene is significantly involved in the release cycle of neurotransmitters including gamma-aminobutyric acid and various monoamines (P-values<2.9 × 10(-11)) that are crucial in triggering the onset of sleep. To conclude, in this first large-scale GWAS of sleep latency we report a novel association of variants in RBFOX3 gene. Further, a functional prediction of RBFOX3 supports the involvement of RBFOX3 with sleep latency.European Journal of Human Genetics advance online publication, 4 May 2016; doi:10.1038/ejhg.2016.31. |
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DATE PUBLISHED |
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HISTORY |
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PUBSTATUS |
PUBSTATUSDATE |
received |
2015/08/18 |
revised |
2016/01/13 |
accepted |
2016/02/01 |
entrez |
2016/05/05 06:00 |
pubmed |
2016/05/05 06:00 |
medline |
2016/05/05 06:00 |
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AUTHORS |
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NAME |
COLLECTIVENAME |
LASTNAME |
FORENAME |
INITIALS |
AFFILIATION |
AFFILIATIONINFO |
Amin N |
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Amin |
Najaf |
N |
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Unit of Genetic Epidemiology, Department of Epidemiology, Erasmus University Medical Centre, Rotterdam, The Netherlands. |
Allebrandt KV |
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Allebrandt |
Karla V |
KV |
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Institute of Medical Psychology, Ludwig-Maximilians-University, Munich, Germany. |
van der Spek A |
|
van der Spek |
Ashley |
A |
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Unit of Genetic Epidemiology, Department of Epidemiology, Erasmus University Medical Centre, Rotterdam, The Netherlands. |
Müller-Myhsok B |
|
Müller-Myhsok |
Bertram |
B |
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Max-Planck-Institute of Psychiatry, Munich, Germany. |
Hek K |
|
Hek |
Karin |
K |
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Department of Psychiatry, Erasmus Medical Center, Rotterdam, The Netherlands. |
Teder-Laving M |
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Teder-Laving |
Maris |
M |
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Estonian Genome Center, University of Tartu and Estonian Biocenter, Tartu, Estonia. |
Hayward C |
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Hayward |
Caroline |
C |
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Medical Research Council, Human Genetics Unit, IGMM, University of Edinburgh, Edinburgh, Scotland. |
Esko T |
|
Esko |
Tõnu |
T |
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Estonian Genome Center, University of Tartu and Estonian Biocenter, Tartu, Estonia. |
van Mill JG |
|
van Mill |
Josine G |
JG |
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Department of Psychiatry, VU University Medical Center Amsterdam, Amsterdam, The Netherlands. |
Mbarek H |
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Mbarek |
Hamdi |
H |
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Department of Biological Psychology, VU University, Amsterdam, The Netherlands. |
Watson NF |
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Watson |
Nathaniel F |
NF |
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University of Washington Medicine Sleep Center, Seattle, WA, USA. |
Melville SA |
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Melville |
Scott A |
SA |
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Department of Medicine (Biomedical Genetics), Boston University School of Medicine, Boston, MA, USA. |
Del Greco FM |
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Del Greco |
Fabiola M |
FM |
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Center for Biomedicine, European Academy of Bolzano, Bolzano, Italy - Affiliated Institute of the University of Lübeck, Lübeck, Germany. |
Byrne EM |
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Byrne |
Enda M |
EM |
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Queensland Institute of Medical Research, Brisbane, QLD, Australia. |
Oole E |
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Oole |
Edwin |
E |
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Center for Biomics, Erasmus Medical Center, Rotterdam, The Netherlands. |
Kolcic I |
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Kolcic |
Ivana |
I |
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School of Medicine, University of Split, Split, Croatia. |
Chen TH |
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Chen |
Ting-Hsu |
TH |
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VA Boston Healthcare System, Boston University, Boston, MA, USA. |
Evans DS |
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Evans |
Daniel S |
DS |
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California Pacific Medical Center Research Institute, San Francisco, CA, USA. |
Coresh J |
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Coresh |
Josef |
J |
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Departments of Epidemiology, Biostatistics, and Medicine, Johns Hopkins University, Baltimore, MD, USA. |
Vogelzangs N |
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Vogelzangs |
Nicole |
N |
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Department of Psychiatry, VU University Medical Center Amsterdam, Amsterdam, The Netherlands. |
Karjalainen J |
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Karjalainen |
Juha |
J |
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Department of Genetics, University Medical Center Groningen and University of Groningen, Groningen, The Netherlands. |
Willemsen G |
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Willemsen |
Gonneke |
G |
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Department of Biological Psychology, VU University, Amsterdam, The Netherlands. |
Gharib SA |
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Gharib |
Sina A |
SA |
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Department of Medicine, Division of Pulmonary & Critical Care Medicine, University of Washington, Seattle, WA, USA. |
Zgaga L |
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Zgaga |
Lina |
L |
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Medical Research Council, Human Genetics Unit, IGMM, University of Edinburgh, Edinburgh, Scotland. |
Mihailov E |
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Mihailov |
Evelin |
E |
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Estonian Genome Center, University of Tartu and Estonian Biocenter, Tartu, Estonia. |
Stone KL |
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Stone |
Katie L |
KL |
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California Pacific Medical Center Research Institute, San Francisco, CA, USA. |
Campbell H |
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Campbell |
Harry |
H |
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Centre for Global Health Research, Usher Institute for Population Health Sciences and Informatics, University of Edinburgh, Edinburgh, Scotland. |
Brouwer RW |
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Brouwer |
Rutger Ww |
RW |
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Center for Biomics, Erasmus Medical Center, Rotterdam, The Netherlands. |
Demirkan A |
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Demirkan |
Ayse |
A |
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Unit of Genetic Epidemiology, Department of Epidemiology, Erasmus University Medical Centre, Rotterdam, The Netherlands. |
Isaacs A |
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Isaacs |
Aaron |
A |
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Unit of Genetic Epidemiology, Department of Epidemiology, Erasmus University Medical Centre, Rotterdam, The Netherlands. |
Dogas Z |
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Dogas |
Zoran |
Z |
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Department of Neuroscience and Sleep Medicine Centre, University of Split School of Medicine, Split, Croatia. |
Marciante KD |
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Marciante |
Kristin D |
KD |
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Cardiovascular Health Research Unit, Department of Medicine, University of Washington, Seattle, WA, USA. |
Campbell S |
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Campbell |
Susan |
S |
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Medical Research Council, Human Genetics Unit, IGMM, University of Edinburgh, Edinburgh, Scotland. |
Borovecki F |
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Borovecki |
Fran |
F |
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Centre for Functional Genomics and Department of Neurology, Faculty of Medicine, University of Zagreb, Zagreb, Croatia. |
Luik AI |
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Luik |
Annemarie I |
AI |
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Department of Epidemiology, Erasmus University Medical Center, Rotterdam, The Netherlands. |
Li M |
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Li |
Man |
M |
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Department of Epidemiology, Johns Hopkins University, Baltimore, MD, USA. |
Hottenga JJ |
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Hottenga |
Jouke Jan |
JJ |
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Department of Biological Psychology, VU University, Amsterdam, The Netherlands. |
Huffman JE |
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Huffman |
Jennifer E |
JE |
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Medical Research Council, Human Genetics Unit, IGMM, University of Edinburgh, Edinburgh, Scotland. |
van den Hout MC |
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van den Hout |
Mirjam Cgn |
MC |
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Center for Biomics, Erasmus Medical Center, Rotterdam, The Netherlands. |
Cummings SR |
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Cummings |
Steven R |
SR |
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California Pacific Medical Center Research Institute, San Francisco, CA, USA. |
Aulchenko YS |
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Aulchenko |
Yurii S |
YS |
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Unit of Genetic Epidemiology, Department of Epidemiology, Erasmus University Medical Centre, Rotterdam, The Netherlands. |
Gehrman PR |
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Gehrman |
Philip R |
PR |
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Department of Psychiatry, University of Pennsylvania, Philadelphia, PA, USA. |
Uitterlinden AG |
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Uitterlinden |
André G |
AG |
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Netherlands Consortium for Healthy Ageing and National Genomics Initiative, Leiden, The Netherlands. |
Wichmann HE |
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Wichmann |
Heinz-Erich |
HE |
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Institute of Medical Statistics and Epidemiology, Technical University Munich, Munich, Germany. |
Müller-Nurasyid M |
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Müller-Nurasyid |
Martina |
M |
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DZHK (German Centre for Cardiovascular Research), Partner Site Munich Heart Alliance, Munich, Germany. |
Fehrmann RS |
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Fehrmann |
Rudolf Sn |
RS |
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Department of Genetics, University Medical Center Groningen and University of Groningen, Groningen, The Netherlands. |
Montgomery GW |
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Montgomery |
Grant W |
GW |
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Queensland Institute of Medical Research, Brisbane, QLD, Australia. |
Hofman A |
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Hofman |
Albert |
A |
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Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA, USA. |
Kao WH |
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Kao |
Wen Hong Linda |
WH |
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Department of Epidemiology, Johns Hopkins University, Baltimore, MD, USA. |
Oostra BA |
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Oostra |
Ben A |
BA |
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Unit of Genetic Epidemiology, Department of Epidemiology, Erasmus University Medical Centre, Rotterdam, The Netherlands. |
Wright AF |
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Wright |
Alan F |
AF |
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Medical Research Council, Human Genetics Unit, IGMM, University of Edinburgh, Edinburgh, Scotland. |
Vink JM |
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Vink |
Jacqueline M |
JM |
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Department of Biological Psychology, VU University, Amsterdam, The Netherlands. |
Wilson JF |
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Wilson |
James F |
JF |
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Centre for Global Health Research, Usher Institute for Population Health Sciences and Informatics, University of Edinburgh, Edinburgh, Scotland. |
Pramstaller PP |
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Pramstaller |
Peter P |
PP |
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Department of Neurology, University of Lübeck, Lübeck, Germany. |
Hicks AA |
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Hicks |
Andrew A |
AA |
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Center for Biomedicine, European Academy of Bolzano, Bolzano, Italy - Affiliated Institute of the University of Lübeck, Lübeck, Germany. |
Polasek O |
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Polasek |
Ozren |
O |
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Centre for Global Health, University of Split School of Medicine, Split, Croatia. |
Punjabi NM |
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Punjabi |
Naresh M |
NM |
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Department of Pulmonary Medicine and Epidemiology, Johns Hopkins University, Baltimore, MD, USA. |
Redline S |
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Redline |
Susan |
S |
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Department of Medicine, Brigham and Women's Hospital and Beth Deaconess Medical Center, Harvard Medical School, Boston, MA, USA. |
Psaty BM |
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Psaty |
Bruce M |
BM |
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Group Health Research Institute, Group Health Cooperative, Seattle, WA, USA. |
Heath AC |
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Heath |
Andrew C |
AC |
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Department of Psychiatry, Washington University, St Louis, MO, USA. |
Merrow M |
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Merrow |
Martha |
M |
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Institute of Medical Psychology, Ludwig-Maximilians-University, Munich, Germany. |
Tranah GJ |
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Tranah |
Gregory J |
GJ |
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California Pacific Medical Center Research Institute, San Francisco, CA, USA. |
Gottlieb DJ |
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Gottlieb |
Daniel J |
DJ |
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VA Boston Healthcare System, Boston, MA, USA. |
Boomsma DI |
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Boomsma |
Dorret I |
DI |
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Department of Biological Psychology, VU University, Amsterdam, The Netherlands. |
Martin NG |
|
Martin |
Nicholas G |
NG |
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Queensland Institute of Medical Research, Brisbane, QLD, Australia. |
Rudan I |
|
Rudan |
Igor |
I |
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Centre for Global Health Research, Usher Institute for Population Health Sciences and Informatics, University of Edinburgh, Edinburgh, Scotland. |
Tiemeier H |
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Tiemeier |
Henning |
H |
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Department of Child and Adolescent Psychiatry, Erasmus MC, Rotterdam, The Netherlands. |
van IJcken WF |
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van IJcken |
Wilfred Fj |
WF |
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Center for Biomics, Erasmus Medical Center, Rotterdam, The Netherlands. |
Penninx BW |
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Penninx |
Brenda W |
BW |
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Department of Psychiatry, VU University Medical Center Amsterdam, Amsterdam, The Netherlands. |
Metspalu A |
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Metspalu |
Andres |
A |
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Estonian Genome Center, University of Tartu and Estonian Biocenter, Tartu, Estonia. |
Meitinger T |
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Meitinger |
Thomas |
T |
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Institute of Human Genetics, Techinsche Universität München, München, Germany. |
Franke L |
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Franke |
Lude |
L |
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Department of Genetics, University Medical Center Groningen and University of Groningen, Groningen, The Netherlands. |
Roenneberg T |
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Roenneberg |
Till |
T |
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Institute of Medical Psychology, Ludwig-Maximilians-University, Munich, Germany. |
van Duijn CM |
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van Duijn |
Cornelia M |
CM |
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Centre for Medical Systems Biology, Leiden, The Netherlands. |
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INVESTIGATORS |
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JOURNAL |
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VOLUME: |
ISSUE: |
TITLE: European journal of human genetics : EJHG |
ISOABBREVIATION: Eur. J. Hum. Genet. |
YEAR: 2016 |
MONTH: May |
DAY: 4 |
MEDLINEDATE: |
SEASON: |
CITEDMEDIUM: Internet |
ISSN: 1476-5438 |
ISSNTYPE: Electronic |
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MEDLINE JOURNAL |
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MEDLINETA: Eur J Hum Genet |
COUNTRY: England |
ISSNLINKING: 1018-4813 |
NLMUNIQUEID: 9302235 |
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JOURNAL ARTICLE |
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COMMENTS AND CORRECTIONS |
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