Genetic Epidemiology, Psychiatric Genetics, Asthma Genetics and Statistical Genetics Laboratories investigate the pattern of disease in families, particularly identical and non-identical twins, to assess the relative importance of genes and environment in a variety of important health problems.
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PMID
27020472
TITLE
Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.
ABSTRACT
Myopia is the most common human eye disorder and it results from complex genetic and environmental causes. The rapidly increasing prevalence of myopia poses a major public health challenge. Here, the CREAM consortium performs a joint meta-analysis to test single-nucleotide polymorphism (SNP) main effects and SNP × education interaction effects on refractive error in 40,036 adults from 25 studies of European ancestry and 10,315 adults from 9 studies of Asian ancestry. In European ancestry individuals, we identify six novel loci (FAM150B-ACP1, LINC00340, FBN1, DIS3L-MAP2K1, ARID2-SNAT1 and SLC14A2) associated with refractive error. In Asian populations, three genome-wide significant loci AREG, GABRR1 and PDE10A also exhibit strong interactions with education (P<8.5 × 10(-5)), whereas the interactions are less evident in Europeans. The discovery of these loci represents an important advance in understanding how gene and environment interactions contribute to the heterogeneity of myopia.
DATE PUBLISHED
2016
HISTORY
PUBSTATUS PUBSTATUSDATE
received 2015/02/09
accepted 2016/02/10
entrez 2016/03/30 06:00
pubmed 2016/03/30 06:00
medline 2016/03/30 06:00
AUTHORS
NAME COLLECTIVENAME LASTNAME FORENAME INITIALS AFFILIATION AFFILIATIONINFO
Fan Q Fan Qiao Q Duke-NUS Medical School, Singapore 169857, Singapore.
Verhoeven VJ Verhoeven Virginie J M VJ Department of Epidemiology, Erasmus Medical Center, 3000 CA Rotterdam, The Netherlands.
Wojciechowski R Wojciechowski Robert R Department of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 20205, USA.
Barathi VA Barathi Veluchamy A VA Department of Ophthalmology, National University Health Systems, National University of Singapore Singapore 119228, Singapore.
Hysi PG Hysi Pirro G PG Department of Twin Research and Genetic Epidemiology, King's College London School of Medicine, London SE1 7EH, UK.
Guggenheim JA Guggenheim Jeremy A JA School of Optometry and Vision Sciences, Cardiff University, Cardiff CF24 4HQ, UK.
Höhn R Höhn René R Department of Ophthalmology, Inselspital, University Hospital Bern, CH-3010 Bern, Switzerland.
Vitart V Vitart Veronique V Medical Research Council Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh EH4 2XU, Scotland.
Khawaja AP Khawaja Anthony P AP Department of Public Health and Primary Care, Institute of Public Health, University of Cambridge School of Clinical Medicine, Cambridge CB2 0SR, UK.
Yamashiro K Yamashiro Kenji K Department of Ophthalmology and Visual Sciences, Kyoto University Graduate School of Medicine, Kyoto 6068507, Japan.
Hosseini SM Hosseini S Mohsen SM Program in Genetics and Genome Biology, The Hospital for Sick Children and Institute for Medical Sciences, University of Toronto, Toronto Ontario, Canada M5G 1X8.
Lehtimäki T Lehtimäki Terho T Department of Clinical Chemistry, Fimlab Laboratories and School of Medicine, University of Tampere, Tampere 33520, Finland.
Lu Y Lu Yi Y Statistical Genetics Laboratory, QIMR Berghofer Medical Research Institute, Herston, Brisbane, Queensland 4029, Australia.
Haller T Haller Toomas T Estonian Genome Center, University of Tartu, Tartu 51010, Estonia.
Xie J Xie Jing J Centre for Eye Research Australia (CERA), Royal Victorian Eye and Ear Hospital, University of Melbourne, Melbourne, Victoria 3002, Australia.
Delcourt C Delcourt Cécile C INSERM, U1219-Bordeaux Population Health Research Center, Bordeaux 33000, France.
Pirastu M Pirastu Mario M Institute of Population Genetics, National Research Council, Sassari 07100, Italy.
Wedenoja J Wedenoja Juho J Department of Ophthalmology, University of Helsinki and Helsinki University Hospital, Helsinki 00014, Finland.
Gharahkhani P Gharahkhani Puya P Statistical Genetics Laboratory, QIMR Berghofer Medical Research Institute, Herston, Brisbane, Queensland 4029, Australia.
Venturini C Venturini Cristina C UCL Institute of Ophthalmology, London SE1 7EH, UK.
Miyake M Miyake Masahiro M Department of Ophthalmology and Visual Sciences, Kyoto University Graduate School of Medicine, Kyoto 6068507, Japan.
Hewitt AW Hewitt Alex W AW Menzies Research Institute Tasmania, University of Tasmania, Hobart, Tasmania 7000, Australia.
Guo X Guo Xiaobo X Department of Statistical Science, School of Mathematics and Computational Science, Sun Yat-Sen University, Guangzhou 510275, China.
Mazur J Mazur Johanna J Institute of Medical Biostatistics, Epidemiology and Informatics, University Medical Center Mainz, 55131 Mainz, Germany.
Huffman JE Huffman Jenifer E JE Medical Research Council Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh EH4 2XU, Scotland.
Williams KM Williams Katie M KM Department of Ophthalmology, King's College London, London SE1 7EH, UK.
Polasek O Polasek Ozren O Faculty of Medicine, University of Split, Split 21000, Croatia.
Campbell H Campbell Harry H Usher Institute for Population Health Sciences and Informatics, University of Edinburgh, Teviot Place, Edinburgh EH8 9AG, Scotland.
Rudan I Rudan Igor I Usher Institute for Population Health Sciences and Informatics, University of Edinburgh, Teviot Place, Edinburgh EH8 9AG, Scotland.
Vatavuk Z Vatavuk Zoran Z Department of Ophthalmology, Sisters of Mercy University Hospital, Zagreb 10000, Croatia.
Wilson JF Wilson James F JF Usher Institute for Population Health Sciences and Informatics, University of Edinburgh, Teviot Place, Edinburgh EH8 9AG, Scotland.
Joshi PK Joshi Peter K PK Usher Institute for Population Health Sciences and Informatics, University of Edinburgh, Teviot Place, Edinburgh EH8 9AG, Scotland.
McMahon G McMahon George G School of Social and Community Medicine, University of Bristol, Bristol BS8 2BN, UK.
St Pourcain B St Pourcain Beate B Max Planck Institute for Psycholinguistics, Wundtlaan 1, 6525 XD Nijmegen, The Netherlands.
Evans DM Evans David M DM University of Queensland Diamantina Institute, Translational Research Institute, Brisbane, Queensland 4102, Australia.
Simpson CL Simpson Claire L CL Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, Tennessee 38163, USA.
Schwantes-An TH Schwantes-An Tae-Hwi TH Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Baltimore, Maryland 21224, USA.
Igo RP Igo Robert P RP Department of Epidemiology and Biostatistics, Case Western Reserve University, Cleveland, Ohio 44106, USA.
Mirshahi A Mirshahi Alireza A Dardenne Eye Hospital, Bonn-Bad Godesberg, 53177 Bonn, Germany.
Cougnard-Gregoire A Cougnard-Gregoire Audrey A INSERM, U1219-Bordeaux Population Health Research Center, Bordeaux 33000, France.
Bellenguez C Bellenguez Céline C Université Lille 2, Lille 59000, France.
Blettner M Blettner Maria M Institute of Medical Biostatistics, Epidemiology and Informatics, University Medical Center Mainz, 55131 Mainz, Germany.
Raitakari O Raitakari Olli O Department of Clinical Physiology and Nuclear Medicine, Turku University Hospital, Turku 20520, Finland.
Kähönen M Kähönen Mika M Department of Clinical Physiology, Tampere University Hospital and School of Medicine, University of Tampere, Tampere 33520, Finland.
Seppala I Seppala Ilkka I Department of Clinical Chemistry, Fimlab Laboratories and School of Medicine, University of Tampere, Tampere 33520, Finland.
Zeller T Zeller Tanja T Clinic for General and Interventional Cardiology, University Heart Center Hamburg, 20246 Hamburg, Germany.
Meitinger T Meitinger Thomas T Institute of Human Genetics, Klinikum rechts der Isar, Technische Universität München, 81675 Munich, Germany.
Consortium for Refractive Error and Myopia (CREAM)
Ried JS Ried Janina S JS Institute of Genetic Epidemiology, Helmholtz Zentrum München-German Research Center for Environmental Health, 85764 Neuherberg, Germany.
Gieger C Gieger Christian C Institute of Genetic Epidemiology, Helmholtz Zentrum München-German Research Center for Environmental Health, 85764 Neuherberg, Germany.
Portas L Portas Laura L Institute of Population Genetics, National Research Council, Sassari 07100, Italy.
van Leeuwen EM van Leeuwen Elisabeth M EM Department of Epidemiology, Erasmus Medical Center, 3000 CA Rotterdam, The Netherlands.
Amin N Amin Najaf N Department of Epidemiology, Erasmus Medical Center, 3000 CA Rotterdam, The Netherlands.
Uitterlinden AG Uitterlinden André G AG Netherlands Consortium for Healthy Ageing, Netherlands Genomics Initiative, 2518 AD Hague, The Netherlands.
Rivadeneira F Rivadeneira Fernando F Netherlands Consortium for Healthy Ageing, Netherlands Genomics Initiative, 2518 AD Hague, The Netherlands.
Hofman A Hofman Albert A Netherlands Consortium for Healthy Ageing, Netherlands Genomics Initiative, 2518 AD Hague, The Netherlands.
Vingerling JR Vingerling Johannes R JR Department of Ophthalmology, Erasmus Medical Center, 3000 CA Rotterdam, The Netherlands.
Wang YX Wang Ya Xing YX Beijing Institute of Ophthalmology, Beijing Tongren Hospital, Capital Medical University, Beijing 100044, China.
Wang X Wang Xu X Saw Swee Hock School of Public Health, National University of Singapore and National University Health Systems, Singapore 117549, Singapore.
Tai-Hui Boh E Tai-Hui Boh Eileen E Saw Swee Hock School of Public Health, National University of Singapore and National University Health Systems, Singapore 117549, Singapore.
Ikram MK Ikram M Kamran MK Duke-NUS Medical School, Singapore 169857, Singapore.
Sabanayagam C Sabanayagam Charumathi C Duke-NUS Medical School, Singapore 169857, Singapore.
Gupta P Gupta Preeti P Singapore Eye Research Institute, Singapore National Eye Centre, Singapore 169856, Singapore.
Tan V Tan Vincent V Singapore Eye Research Institute, Singapore National Eye Centre, Singapore 169856, Singapore.
Zhou L Zhou Lei L Singapore Eye Research Institute, Singapore National Eye Centre, Singapore 169856, Singapore.
Ho CE Ho Candice E H CE Singapore Eye Research Institute, Singapore National Eye Centre, Singapore 169856, Singapore.
Lim W Lim Wan'e W Department of Ophthalmology, National University Health Systems, National University of Singapore Singapore 119228, Singapore.
Beuerman RW Beuerman Roger W RW Department of Ophthalmology, National University Health Systems, National University of Singapore Singapore 119228, Singapore.
Siantar R Siantar Rosalynn R National Healthcare Group Eye Institute, Tan Tock Seng Hospital, Singapore 308433, Singapore.
Tai ES Tai E-Shyong ES Department of Medicine, National University of Singapore, Singapore 119228, Singapore.
Vithana E Vithana Eranga E Department of Ophthalmology, National University Health Systems, National University of Singapore Singapore 119228, Singapore.
Mihailov E Mihailov Evelin E Estonian Genome Center, University of Tartu, Tartu 51010, Estonia.
Khor CC Khor Chiea-Chuen CC Division of Human Genetics, Genome Institute of Singapore, Singapore 138672, Singapore.
Hayward C Hayward Caroline C Medical Research Council Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh EH4 2XU, Scotland.
Luben RN Luben Robert N RN Department of Public Health and Primary Care, Institute of Public Health, University of Cambridge School of Clinical Medicine, Cambridge CB2 0SR, UK.
Foster PJ Foster Paul J PJ NIHR Biomedical Research Centre, Moorfields Eye Hospital NHS Foundation Trust and UCL Institute of Ophthalmology, London EC1V 2PD, UK.
Klein BE Klein Barbara E K BE Department of Ophthalmology and Visual Sciences, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin 53726, USA.
Klein R Klein Ronald R Department of Ophthalmology and Visual Sciences, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin 53726, USA.
Wong HS Wong Hoi-Suen HS Program in Genetics and Genome Biology, The Hospital for Sick Children and Institute for Medical Sciences, University of Toronto, Toronto Ontario, Canada M5G 1X8.
Mitchell P Mitchell Paul P Department of Ophthalmology, Centre for Vision Research, Westmead Institute for Medical Research, University of Sydney, Sydney, New South Wales 2145, Australia.
Metspalu A Metspalu Andres A Estonian Genome Center, University of Tartu, Tartu 51010, Estonia.
Aung T Aung Tin T Department of Ophthalmology, National University Health Systems, National University of Singapore Singapore 119228, Singapore.
Young TL Young Terri L TL Department of Ophthalmology and Visual Sciences, School of Medicine and Public Health, University of Wisconsin, Madison, Wisconsin 53705, USA.
He M He Mingguang M State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-Sen University, Guangzhou 510060, China.
Pärssinen O Pärssinen Olavi O Gerontology Research Center and Department of Health Sciences, University of Jyväskylä, Jyväskylä 40014, Finland.
van Duijn CM van Duijn Cornelia M CM Department of Epidemiology, Erasmus Medical Center, 3000 CA Rotterdam, The Netherlands.
Jin Wang J Jin Wang Jie J Department of Ophthalmology, Centre for Vision Research, Westmead Institute for Medical Research, University of Sydney, Sydney, New South Wales 2145, Australia.
Williams C Williams Cathy C School of Social and Community Medicine, University of Bristol, Bristol BS8 2BN, UK.
Jonas JB Jonas Jost B JB Medical Faculty Mannheim, Department of Ophthalmology, Ruprecht-Karls-University Heidelberg, 69115 Mannheim, Germany.
Teo YY Teo Yik-Ying YY Department of Statistics and Applied Probability, National University of Singapore, Singapore 117546, Singapore.
Mackey DA Mackey David A DA Centre for Ophthalmology and Visual Science, Lions Eye Institute, University of Western Australia, Perth, Western Australia 6009, Australia.
Oexle K Oexle Konrad K Institute of Human Genetics, Klinikum rechts der Isar, Technische Universität München, 81675 Munich, Germany.
Yoshimura N Yoshimura Nagahisa N Department of Ophthalmology and Visual Sciences, Kyoto University Graduate School of Medicine, Kyoto 6068507, Japan.
Paterson AD Paterson Andrew D AD Program in Genetics and Genome Biology, The Hospital for Sick Children and Institute for Medical Sciences, University of Toronto, Toronto Ontario, Canada M5G 1X8.
Pfeiffer N Pfeiffer Norbert N Department of Ophthalmology, University Medical Center Mainz, 55131 Mainz, Germany.
Wong TY Wong Tien-Yin TY Saw Swee Hock School of Public Health, National University of Singapore and National University Health Systems, Singapore 117549, Singapore.
Baird PN Baird Paul N PN Centre for Eye Research Australia (CERA), Royal Victorian Eye and Ear Hospital, University of Melbourne, Melbourne, Victoria 3002, Australia.
Stambolian D Stambolian Dwight D Department of Ophthalmology, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Wilson JE Wilson Joan E Bailey JE Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Baltimore, Maryland 21224, USA.
Cheng CY Cheng Ching-Yu CY Department of Ophthalmology, National University Health Systems, National University of Singapore Singapore 119228, Singapore.
Hammond CJ Hammond Christopher J CJ Department of Ophthalmology, King's College London, London SE1 7EH, UK.
Klaver CC Klaver Caroline C W CC Department of Epidemiology, Erasmus Medical Center, 3000 CA Rotterdam, The Netherlands.
Saw SM Saw Seang-Mei SM Saw Swee Hock School of Public Health, National University of Singapore and National University Health Systems, Singapore 117549, Singapore.
Rahi JS Rahi Jugnoo S JS
Korobelnik JF Korobelnik Jean-François JF
Kemp JP Kemp John P JP
Timpson NJ Timpson Nicholas J NJ
Smith GD Smith George Davey GD
Craig JE Craig Jamie E JE
Burdon KP Burdon Kathryn P KP
Fogarty RD Fogarty Rhys D RD
Iyengar SK Iyengar Sudha K SK
Chew E Chew Emily E
Janmahasatian S Janmahasatian Sarayut S
Martin NG Martin Nicholas G NG
MacGregor S MacGregor Stuart S Statistical Genetics Laboratory, QIMR Berghofer Medical Research Institute, Herston, Brisbane, Queensland 4029, Australia.
Xu L Xu Liang L Beijing Institute of Ophthalmology, Beijing Tongren Hospital, Capital Medical University, Beijing 100044, China.
Schache M Schache Maria M Centre for Eye Research Australia (CERA), Royal Victorian Eye and Ear Hospital, University of Melbourne, Melbourne, Victoria 3002, Australia.
Nangia V Nangia Vinay V
Panda-Jonas S Panda-Jonas Songhomitra S
Wright AF Wright Alan F AF Medical Research Council Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh EH4 2XU, Scotland.
Fondran JR Fondran Jeremy R JR
Lass JH Lass Jonathan H JH
Feng S Feng Sheng S
Zhao JH Zhao Jing Hua JH
Khaw KT Khaw Kay-Tee KT Department of Public Health and Primary Care, Institute of Public Health, University of Cambridge School of Clinical Medicine, Cambridge CB2 0SR, UK.
Wareham NJ Wareham Nick J NJ
Rantanen T Rantanen Taina T
Kaprio J Kaprio Jaakko J
Pang CP Pang Chi Pui CP
Chen LJ Chen Li Jia LJ
Tam PO Tam Pancy O PO
Jhanji V Jhanji Vishal V
Young AL Young Alvin L AL
Döring A Döring Angela A
Raffel LJ Raffel Leslie J LJ
Cotch MF Cotch Mary-Frances MF
Li X Li Xiaohui X
Yip SP Yip Shea Ping SP
Yap MK Yap Maurice K H MK
Biino G Biino Ginevra G
Vaccargiu S Vaccargiu Simona S Institute of Population Genetics, National Research Council, Sassari 07100, Italy.
Fossarello M Fossarello Maurizio M Institute of Population Genetics, National Research Council, Sassari 07100, Italy.
Fleck B Fleck Brian B
Yazar S Yazar Seyhan S Centre for Ophthalmology and Visual Science, Lions Eye Institute, University of Western Australia, Perth, Western Australia 6009, Australia.
Tideman JW Tideman Jan Willem L JW Department of Epidemiology, Erasmus Medical Center, 3000 CA Rotterdam, The Netherlands.
Tedja M Tedja Milly M Department of Epidemiology, Erasmus Medical Center, 3000 CA Rotterdam, The Netherlands.
Deangelis MM Deangelis Margaret M MM
Morrison M Morrison Margaux M
Farrer L Farrer Lindsay L
Zhou X Zhou Xiangtian X
Chen W Chen Wei W
Mizuki N Mizuki Nobuhisa N
Meguro A Meguro Akira A
Mäkelä KM Mäkelä Kari Matti KM
INVESTIGATORS
JOURNAL
VOLUME: 7
ISSUE:
TITLE: Nature communications
ISOABBREVIATION: Nat Commun
YEAR: 2016
MONTH:
DAY:
MEDLINEDATE:
SEASON:
CITEDMEDIUM: Internet
ISSN: 2041-1723
ISSNTYPE: Electronic
MEDLINE JOURNAL
MEDLINETA: Nat Commun
COUNTRY: England
ISSNLINKING: 2041-1723
NLMUNIQUEID: 101528555
PUBLICATION TYPE
PUBLICATIONTYPE TEXT
Journal Article
COMMENTS AND CORRECTIONS
REFTYPE REFSOURCE REFPMID NOTE
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PMC4820539 NLM