Example datasets and analyses
aceex.in
ACE levels and ACE indel
aldh2.in
ALDH2 genotype and alcoholism
alopeciaex.in
Congenital alopecia universalis
ataxiaex.in
Episodic Ataxia/Myokymia
blau.in
Blau family syndrome
boricex.in
Boric acid teratogeneticity
cavanaughex.in
Crohn's Disease and chromosome 16
cf.in
Classical segregation analysis of cystic fibrosis
codis6.in
Microsatellites in six populations
contra.in
Contraceptive use in Bangladesh
dalmation.in
Blue eyes and deafness in dogs
ellipto5ex.in
Elliptocytosis
eyes.in
Diabetic retinopathy photocoagulation trial
feigl.in
AML survival
filliben.in
Using the Filliben correlation
frenchad.in
APOE, age and dementia
foxman.in
Logistic regression
fst.in
Multilocus Fst
hanley.in
SES, family and height
histio.in
Faisalabad Histiocytosis
hla7.in
HLA in seven populations
hlp3.in
Hyperlipidemia
infertcc.in
Conditional logistic regression
jensen.in
Hard pedigrees for Gibbs sampling
jicaque.in
An inbred pedigree
kidney.in
Weibull frailty analysis
laprise.in
Atopy and MS4A2
linclex.in
Lipofuscinosis
liuex.in
Alzheimers and APOE
longqtex.in
Homozygosity mapping
macros.in
Example macros calling MENDEL etc
melaexpression.in
A small eQTL GWAS dataset
melaexpression.bin.gz
The actual eQTL data
mito8.in
Mitochondrial SNPs in four HapMap populations
morm.in
MORM syndrome in an inbred pedigree
morrell.in
Waardenberg syndrome, MITF and TYR
mooser.in
Lp(a) and Apo(a)
mps.in
Multiple pterygium syndrome
nancycats.in
Population genetics of stray cats
neff1999.in
Dog marker mapping data
orthodont.in
Growth curve
presenilin2.in
PSEN2 and Alzheimers in Volga Germans
ratsurv.in
Survival analysis
sieve.in
Sieve of Eratosthenes
sle.in
Lupus and 11q14
skorecki.in
Y haplotypes in Jewish priests
thc2.in
Inherited thrombocytopenia and 10p
thomas.in
Hemochromatosis and 6p
twinaceex.in
Serum ACE in twins
twodist.in
Mixture of normals
usher1c.in
Usher syndrome in Acadians
volgaex.in
Alzheimers in Volga Germans
williamsex.in
Hypercholesterolemia
zieve.in
Atopy and blood group (Zieve et al 1937)
Extending Sib-pair using macros and Scheme
macros.in
Assorted macros
scheme.in
Assorted Scheme functions
getNCBIsnp.in
Grab SNP information (requires
wget
)
gnuplot.in
Plot data using gnuplot (requires
gnuplot
)
ack.in
A Scheme mini-benchmark
cal.in
The Unix cal command
where.in
Select a subset of data for analysis eg "where (male) assoc trait"
multinomial.in
Multinomial association analysis with covariates
Regression testing
testsuite.in
Run program through paces