Class | Analysis and data manipulation command |
Name | undrop |
Arguments | [(<loc1>...[<locB> to <locC>]... [$(m|x|q|a)] ...<locN>) | where <search string>]. |
Return previously dropped loci to analysis. Default is to return all dropped loci to analysis. Loci can be selected on name (including wild cards), class, or annotation (where). This is not the reverse of the delete command.
Example:
>> drop $m >> undrop where "(chr 12)" >> undrop D11S97
Class | Analysis and data manipulation command |
Name | undrop |
Arguments | where (monomorphic | max [<|<=|>|>=|==|^=] <frequency> | number_typed [<|<=|>|>=|==|^=] (<ntyp>| <prop_typ>) | missing [<|<=|>|>=|==|^=] (<ntyp>| <prop_typ>) | distance <smallest_gap> | chromosome <chr1> [...<chrN>] | position <start of interval> <end of interval> | r2 <largest_r2> | every number_skipped | hwe_p [<|<=|>|>=|==|^=] [<critical_P>] | test_p [<|<=|>|>=|==|^=] [<critical_P>] | covers <trait> [<n_uncovered_cats>] | <search_string>) |
Return loci to active list for analysis. The where condition can be used to match the set of loci meeting that condition. Available conditions are:
In the case of the r2 and distance options, undrop is not particularly useful.
Example:
>> include volgaex.in >> drop $m >> undrop where hwe > 0.1 Selecting markers with HWE P-value > 0.1 Reactivated 2 loci.
See also:
keep | drop | keep/drop useful/less loci |
<< (keep) | Up to index | >> (select) |