Sib-pair Command: hwe


ClassAnalysis and data manipulation command
Namehwe
Arguments [founders] [<mar1>..[to]..<marN>] [$(m | x)].

Prints chi-square statistic for Hardy-Weinberg equilibrium for all marker loci. Analysis may be restricted to founders, and if the marker is diallelic, an exact test is carried out. If nonfounders are included, then a gene-dropping simulated P-value is produced. The mean IBS sharing for all typed matings is also calculated, and compared to its expected value. This latter test may allow detection of homogamy or assortment.

Example:

>> include linclex.in
>> hwe 
>> set plevel 1
>> hwe 

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